View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_21 (Length: 337)

Name: NF18065_low_21
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_21
NF18065_low_21
[»] chr5 (3 HSPs)
chr5 (76-241)||(26112677-26112841)
chr5 (272-324)||(26112594-26112646)
chr5 (9-63)||(26112903-26112957)
[»] chr4 (3 HSPs)
chr4 (73-241)||(12092855-12093022)
chr4 (272-324)||(12093051-12093103)
chr4 (2-63)||(12092735-12092796)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 26112841 - 26112677
Alignment:
Q  76 gttcaaattgcttgtttaccatgtgaattaatgtgtg--ggaaataaacagtcgtatgacccaatattatatcccttcttatactgataactgtaattca 173  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||||||| ||||||||   ||||||||||||| ||||||    
T  26112841 gttcaaattgcttgtttaccacgtgaattaatgtgtgtgggaaataaatagttgtatgacccaatattctatccctt---atactgataactgaaattca 26112745  T
Q  174 ttagaaattccgtattaattaggcgtgagcatataccattccccaataaaacaaaaataataattcca 241  Q
    || ||||||||  |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  26112744 ttggaaattcccaattaattaggcgtgagcatataccattttccaattaaacaaaaataataattcca 26112677  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 26112646 - 26112594
Alignment:
Q  272 ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaa 324  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26112646 ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaa 26112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 26112957 - 26112903
Alignment:
Q  9 atacattcatataagaataatgacatattatgaaacgtcaaagaatgtccataaa 63  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||    
T  26112957 atacattcatataagaacaatggcatattatgaaacgtcaaaggatgtccataaa 26112903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 12092855 - 12093022
Alignment:
Q  73 accgttcaaattgcttgtttaccatgtgaattaatgtgtg--ggaaataaacagtcgtatgacccaatattatatcccttcttatactgataactgtaat 170  Q
    |||||||||||| ||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||||||| ||||||||   ||||||||| ||| |||    
T  12092855 accgttcaaattacttgtttaccacgtgaattaatgtgtgtgggaaataaatagttgtatgacccaatattctatccctt---atactgatagctgaaat 12092951  T
Q  171 tcattagaaattccgtattaattaggcgtgagcatataccattccccaataaaacaaaaataataattcca 241  Q
    ||||| ||||||||  |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  12092952 tcattggaaattcccaattaattaggcgtgagcatataccattttccaattaaacaaaaataataattcca 12093022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 12093051 - 12093103
Alignment:
Q  272 ccagcatttgaagctcaaccgtttgtatatattacttccaacaaaatagggaa 324  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12093051 ccagcatttgaagctcaaccgtttgtatatatcacttccaacaaaatagggaa 12093103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 12092735 - 12092796
Alignment:
Q  2 atgactgatacattcatataagaataatgacatattatgaaacgtcaaagaatgtccataaa 63  Q
    |||||||||||||||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  12092735 atgactgatacattcatataagaccaatggcctattatgaaacgtcaaaggatgtccataaa 12092796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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