View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_23 (Length: 323)

Name: NF18065_low_23
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_23
NF18065_low_23
[»] chr5 (11 HSPs)
chr5 (1-312)||(35537994-35538302)
chr5 (218-312)||(32555453-32555547)
chr5 (29-189)||(23773300-23773461)
chr5 (199-262)||(19271514-19271577)
chr5 (1-50)||(35537927-35537976)
chr5 (31-168)||(28865021-28865159)
chr5 (217-263)||(545962-546008)
chr5 (217-263)||(8075759-8075805)
chr5 (206-263)||(25590581-25590638)
chr5 (226-263)||(40612594-40612631)
chr5 (206-302)||(34173392-34173488)
[»] chr8 (21 HSPs)
chr8 (28-312)||(31074116-31074402)
chr8 (30-312)||(28524880-28525163)
chr8 (69-305)||(9626217-9626455)
chr8 (30-167)||(28006334-28006472)
chr8 (30-167)||(28063637-28063775)
chr8 (30-168)||(28005590-28005729)
chr8 (30-168)||(28062893-28063032)
chr8 (217-304)||(39138570-39138657)
chr8 (199-301)||(12637649-12637751)
chr8 (176-312)||(28005465-28005603)
chr8 (176-312)||(28062768-28062906)
chr8 (225-311)||(36032829-36032915)
chr8 (30-168)||(28526305-28526437)
chr8 (199-262)||(2552186-2552248)
chr8 (191-312)||(28006475-28006596)
chr8 (191-312)||(28063778-28063899)
chr8 (191-312)||(31075170-31075291)
chr8 (217-310)||(33314982-33315075)
chr8 (217-263)||(41121276-41121322)
chr8 (217-263)||(5737013-5737058)
chr8 (217-263)||(32898371-32898417)
[»] chr2 (21 HSPs)
chr2 (30-312)||(18675206-18675489)
chr2 (226-312)||(14887413-14887499)
chr2 (176-312)||(37607224-37607361)
chr2 (221-312)||(12746111-12746202)
chr2 (141-312)||(38853877-38854051)
chr2 (199-310)||(21733659-21733770)
chr2 (140-312)||(38854911-38855086)
chr2 (217-310)||(34037579-34037672)
chr2 (78-301)||(34582435-34582660)
chr2 (67-172)||(14887289-14887395)
chr2 (225-298)||(14886593-14886666)
chr2 (228-312)||(26585200-26585282)
chr2 (74-118)||(12745982-12746026)
chr2 (73-167)||(26586071-26586166)
chr2 (199-262)||(31443133-31443196)
chr2 (217-263)||(33161939-33161985)
chr2 (217-263)||(39016309-39016355)
chr2 (187-247)||(26586170-26586231)
chr2 (260-312)||(15441920-15441972)
chr2 (199-263)||(17466212-17466276)
chr2 (80-156)||(37607361-37607437)
[»] chr7 (19 HSPs)
chr7 (131-263)||(8870150-8870284)
chr7 (130-305)||(8870844-8871023)
chr7 (132-312)||(30917835-30918016)
chr7 (134-266)||(24287648-24287782)
chr7 (226-312)||(24288781-24288867)
chr7 (226-312)||(25621636-25621722)
chr7 (131-197)||(8879360-8879428)
chr7 (17-168)||(25621458-25621611)
chr7 (217-308)||(22621253-22621344)
chr7 (38-189)||(24288608-24288759)
chr7 (214-263)||(48647366-48647415)
chr7 (78-154)||(329998-330074)
chr7 (228-262)||(2677721-2677755)
chr7 (226-312)||(27067904-27067990)
chr7 (226-312)||(27210323-27210409)
chr7 (217-263)||(42477531-42477577)
chr7 (217-263)||(48788598-48788644)
chr7 (30-63)||(35728029-35728062)
chr7 (199-263)||(8048672-8048736)
[»] chr4 (12 HSPs)
chr4 (30-312)||(21621945-21622229)
chr4 (201-312)||(32244578-32244689)
chr4 (187-312)||(2786345-2786471)
chr4 (176-293)||(24745939-24746057)
chr4 (176-312)||(32244396-32244533)
chr4 (207-266)||(26172836-26172895)
chr4 (217-312)||(21623023-21623118)
chr4 (187-312)||(24753435-24753562)
chr4 (217-263)||(19050407-19050453)
chr4 (217-275)||(31844870-31844928)
chr4 (199-260)||(42391794-42391855)
chr4 (217-305)||(6039250-6039338)
[»] chr1 (17 HSPs)
chr1 (81-312)||(50106971-50107204)
chr1 (132-260)||(1407802-1407932)
chr1 (176-312)||(29766045-29766182)
chr1 (31-189)||(11060519-11060678)
chr1 (128-312)||(44719472-44719658)
chr1 (217-312)||(8975281-8975376)
chr1 (187-312)||(11060660-11060785)
chr1 (31-189)||(11059846-11060005)
chr1 (217-263)||(25038052-25038098)
chr1 (217-263)||(25043264-25043310)
chr1 (248-312)||(33342538-33342602)
chr1 (199-263)||(44720735-44720799)
chr1 (221-263)||(3117820-3117862)
chr1 (217-263)||(7944306-7944352)
chr1 (206-263)||(22856851-22856906)
chr1 (217-263)||(32665696-32665742)
chr1 (219-263)||(51450171-51450215)
[»] chr6 (2 HSPs)
chr6 (217-262)||(24621249-24621294)
chr6 (221-307)||(5265325-5265411)
[»] chr3 (6 HSPs)
chr3 (226-312)||(36827390-36827476)
chr3 (217-257)||(33427888-33427928)
chr3 (217-263)||(48809581-48809627)
chr3 (225-310)||(3671162-3671247)
chr3 (217-257)||(19114670-19114710)
chr3 (199-263)||(55389377-55389441)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 35537994 - 35538302
Alignment:
Q  1 tagaatatagaagagtttactgtcagaatctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  35537994 tagaatatagaagagtttactgtcagaatctaactcatagtaaatatgcacagtcagtgatcttacatcaagtctctcgcaaccacagaacaactttgtt 35538093  T
Q  101 gtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttgggatattgattttcaatttatggatattgattttcagggatattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35538094 gtggaagatgactcagtttttaatgacgagcaacactttg---ggacaagtttgggatattgattttcaatttatggatattgattttcagggatattat 35538190  T
Q  201 tttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  35538191 tttcggttcagaaacgaaagtgataattttctactttcactttagtctttgtgacacctcatactctttcttagcataaaatgtttgtcgcatcatcagt 35538290  T
Q  301 taacagaattat 312  Q
    ||||||||||||    
T  35538291 taacagaattat 35538302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 32555453 - 32555547
Alignment:
Q  218 aagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||||| || | |||||||||  ||||||| ||||||| |||||| ||||||    
T  32555453 aagtgacaattttctactttcactttagtccatgtgacacctcatactccttgtcagcataaaacctttgtcatatcatcaattaacataattat 32555547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 23773300 - 23773461
Alignment:
Q  29 tctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacg 128  Q
    ||||||| ||||||||||||||||||||| || || | |  |||| || |||||||||||||||| ||  ||| | ||||||||  |||| || |||| |    
T  23773300 tctaactaatagtaagtatgcacagtcagggacctaacaataagtatcccgcaaccacaaaacaatttcattgagcaagatgacatagttcttgatgaag 23773399  T
Q  129 agcaacactttgttgggacaagtttg-ggatattgattttcaatttatggatattgattttc 189  Q
    |||||||||| |||| ||| | |||| ||||||||||||||| || | ||||||| ||||||    
T  23773400 agcaacacttcgttgtgacgattttgaggatattgattttcagttcagggatattaattttc 23773461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 19271577 - 19271514
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcat 262  Q
    |||||||||||||  || ||||||| |||||||||||||||||||||||||| |||||||||||    
T  19271577 attttcagttcagggactaaagtgacaattttctactttcactttagtccttctaacacctcat 19271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35537927 - 35537976
Alignment:
Q  1 tagaatatagaagagtttactgtcagaatctaactcatagtaagtatgca 50  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||    
T  35537927 tagaatatagaagagtttactgtcaggatttaactcatagtaagtatgca 35537976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 28865021 - 28865159
Alignment:
Q  31 taactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgag 130  Q
    ||||| || ||||||||||| || ||| || || | | |||||||| |||||||||||||||||||  | | ||||||||| |||||| || |  | |||    
T  28865021 taactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccacaaaacaacttcatcgaggaagatgagtcagttctttaaaaagag 28865120  T
Q  131 caacactttgttgggacaagtttg-ggatattgattttc 168  Q
    |||||||| |||| ||| |||||| ||||||| ||||||    
T  28865121 caacacttcgttgagacgagtttgaggatattaattttc 28865159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 545962 - 546008
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  545962 aaagtgactattttctactttcactttggtccttgtgacacctcata 546008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 8075759 - 8075805
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||| |||||| ||||||||||| |||||||| ||||||||||    
T  8075759 aaagtgatcattttcgactttcactttggtccttgtgacacctcata 8075805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 25590638 - 25590581
Alignment:
Q  206 gttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||| || |||||||  |||||||||||||||||| |||| ||| ||||||||||    
T  25590638 gttcagagaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 25590581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 40612594 - 40612631
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  40612594 attttctactttcactttggtccttgtgacacctcata 40612631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 34173488 - 34173392
Alignment:
Q  206 gttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagtta 302  Q
    ||||||| || |||||||| |||||||||||||| |||||||| ||| | |||| || | | || | |||| ||||  |||||||| ||||||||||    
T  34173488 gttcagagaccaaagtgatcattttctactttcagtttagtccctgtgataccttatgcaccttgtcagcacaaaacatttgtcacctcatcagtta 34173392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 312
Target Start/End: Complemental strand, 31074402 - 31074116
Alignment:
Q  28 atctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgac 127  Q
    |||||||| |||||||||||||| |||||| || || | ||||| |||| | |||||| | ||||||||  | | ||||||||||  |||| || | ||     
T  31074402 atctaactgatagtaagtatgcatagtcagggacctaacatcaaatctcacacaaccatagaacaacttcatcgaggaagatgacctagttcttgacgaa 31074303  T
Q  128 gagcaacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatatt-attttcagttcagaaacgaaagtgata 225  Q
    |||||||| || |||||||| |||||||| ||||||||||||  || |||||||||| ||| ||| |||| | |||||||| ||||  || ||||||||     
T  31074302 gagcaacatttcgttgggacgagtttggggatattgattttcggttcatggatattgttttccagtgataatgattttcaggtcagggaccaaagtgatc 31074203  T
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||| ||||||||||||||  || ||||||||||| | || |||||||||||  |||| ||||||||||||||||| ||||||    
T  31074202 attttctattttcactttagtccccgtgacacctcataccccttgttagcataaaacatttgccacatcatcagttaacaaaattat 31074116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 28525163 - 28524880
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| |||||||||||||||||| || || || | | ||| |||  |||| |||||| |||||||  ||| |||||||||| || || |||| || ||    
T  28525163 ctaactgatagtaagtatgcacagttagagacctaacaacaaatcttccgcagccacaagacaacttcattgaggaagatgacccaattattaaagaaga 28525064  T
Q  130 gcaacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatatt-attttcagttcagaaacgaaagtgataat 227  Q
    ||||||||| |||||||| |||||||| ||||||||||||| || | ||||| |||||||  |||||||| |||||| |||||   || ||| ||| |||    
T  28525063 gcaacacttcgttgggacgagtttggggatattgattttcagttcagggataatgattttt-gggatattgattttcggttcacggaccaaaatgacaat 28524965  T
Q  228 tttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||| ||||||||||||||||| | | |||| ||||||||||| | | |||||||| |||| ||||||||||||||||| ||||||    
T  28524964 tttttactttcactttagtccatctgacacttcatactctttgtcaacataaaatctttgccacatcatcagttaacaaaattat 28524880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 9626217 - 9626455
Alignment:
Q  69 caagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttg-ggatattgatttt 167  Q
    |||||||| | ||||||||  |||||||  ||| | ||||||||| |||| || | || ||| |||||||  ||||||| |||||  |||||||||||||    
T  9626217 caagtctcccacaaccacattacaacttcattgagaaagatgacttagttcttgacgaagagaaacacttccttgggacgagtttaaggatattgatttt 9626316  T
Q  168 caatttatggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactc 266  Q
    |   | | | ||||||||||||| |||||||| ||||| ||||||  |  |||||| | | ||||||||||||||||||| | ||| |||||||||||||    
T  9626317 cgggtcaggaatattgattttcaaggatattaattttcggttcagggattaaagtggtcaatttctactttcactttagttcatgtgacacctcatactc 9626416  T
Q  267 tttcttagcataaaatgtttgtcacatcatcagttaaca 305  Q
    ||| | |||||||||  |||||||||||||| |||||||    
T  9626417 tttgtcagcataaaacttttgtcacatcatcggttaaca 9626455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 28006334 - 28006472
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| |||||||||||||||| |||| || || | |  |||||||||||||||||| ||||||||||||| |||||||||| ||||| || | || ||    
T  28006334 ctaactgatagtaagtatgcacaatcagggacctaacagaaagtctctcgcaaccacataacaactttgttgaggaagatgacccagttcttgaagaaga 28006433  T
Q  130 gcaacactttgttgggacaagtttg-ggatattgatttt 167  Q
    ||||| |||  ||||||| |||||| |||||||||||||    
T  28006434 gcaactcttcattgggacgagtttgaggatattgatttt 28006472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 28063637 - 28063775
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| |||||||||||||||| |||| || || | |  |||||||||||||||||| ||||||||||||| |||||||||| ||||| || | || ||    
T  28063637 ctaactgatagtaagtatgcacaatcagggacctaacagaaagtctctcgcaaccacataacaactttgttgaggaagatgacccagttcttgaagaaga 28063736  T
Q  130 gcaacactttgttgggacaagtttg-ggatattgatttt 167  Q
    ||||| |||  ||||||| |||||| |||||||||||||    
T  28063737 gcaactcttcattgggacgagtttgaggatattgatttt 28063775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 28005729 - 28005590
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| || ||||||||||||||| || || || ||| |||||||| |||||||||| ||||||||  ||| ||||||||||| |||| || | || ||    
T  28005729 ctaactgattgtaagtatgcacagttagggacctaaaagcaagtctcccgcaaccacataacaacttcattgaggaagatgacttagttcttgacgaaga 28005630  T
Q  130 gcaacactttgttgggacaagttt-gggatattgattttc 168  Q
    | ||||||| ||||| || ||||| |||||||||||||||    
T  28005629 ggaacacttcgttggaacgagtttggggatattgattttc 28005590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 28063032 - 28062893
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| || ||||||||||||||| || || || ||| |||||||| |||||||||| ||||||||  ||| ||||||||||| |||| || | || ||    
T  28063032 ctaactgattgtaagtatgcacagttagggacctaaaagcaagtctcccgcaaccacataacaacttcattgaggaagatgacttagttcttgacgaaga 28062933  T
Q  130 gcaacactttgttgggacaagttt-gggatattgattttc 168  Q
    | ||||||| ||||| || ||||| |||||||||||||||    
T  28062932 ggaacacttcgttggaacgagtttggggatattgattttc 28062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 39138570 - 39138657
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaac 304  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||  ||||||||||| ||| |||||    
T  39138570 aaagtgaccattttctactttcactttagtccttgtgacacctcatacactttgtcagcataaaacttttgtcacatcgtcaattaac 39138657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 12637649 - 12637751
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatca 298  Q
    |||||||||||||  || |||||||| || |||||||||||||||||||| ||| |||| |||||||| || |||| ||||||  |||| ||||||||||    
T  12637649 attttcagttcagggaccaaagtgatcatattctactttcactttagtccatgtgacacatcatactccttgttagtataaaacctttgccacatcatca 12637748  T
Q  299 gtt 301  Q
    |||    
T  12637749 gtt 12637751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 28005603 - 28005465
Alignment:
Q  176 ggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataa-ttttctactttcactttagtccttgtaacacctcatactctttctta 273  Q
    |||||||||||||| | ||||||| ||||  ||||||  || |||||| ||| |||| ||||||||||||||||||| | |||||| ||||||||| |||    
T  28005603 ggatattgattttcggagatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgtta 28005504  T
Q  274 gcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    | ||||||  |||| |||||||||| || ||| ||||||    
T  28005503 gtataaaacttttgccacatcatcaattcacataattat 28005465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 28062906 - 28062768
Alignment:
Q  176 ggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataa-ttttctactttcactttagtccttgtaacacctcatactctttctta 273  Q
    |||||||||||||| | ||||||| ||||  ||||||  || |||||| ||| |||| ||||||||||||||||||| | |||||| ||||||||| |||    
T  28062906 ggatattgattttcggagatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgtta 28062807  T
Q  274 gcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    | ||||||  |||| |||||||||| || ||| ||||||    
T  28062806 gtataaaacttttgccacatcatcaattcacataattat 28062768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 311
Target Start/End: Complemental strand, 36032915 - 36032829
Alignment:
Q  225 aattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaatta 311  Q
    ||||||||||||||||||| |||| ||| ||||||||||| | || ||  |||||||| |||||||| |||||||||||| ||||||    
T  36032915 aattttctactttcactttcgtccctgtgacacctcataccccttgttgacataaaatatttgtcacgtcatcagttaactgaatta 36032829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 28526305 - 28526437
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaa--gtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgac 127  Q
    |||||| ||||||||||||||||||||| || || | |||||  ||||| |||||||||| ||||||        |||||||||||||||| || | ||     
T  28526305 ctaactgatagtaagtatgcacagtcagggacctaacatcaaaagtctcccgcaaccacataacaac--------ggaagatgactcagttcttgacgaa 28526396  T
Q  128 gagcaacactttgttgggacaagtttgggatattgattttc 168  Q
    ||||||||||| |||| ||| |||||| |||||||||||||    
T  28526397 gagcaacacttcgttgagacgagtttgagatattgattttc 28526437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 2552248 - 2552186
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcat 262  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||    
T  2552248 attttcggttcagaaaccaaagtgacaattttctactttcactttagtcc-tgtgacacctcat 2552186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 28006475 - 28006596
Alignment:
Q  191 gggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtc 289  Q
    |||||||| ||||| |||||||  || |||||||  | |||||| |||||||||||||||||| | || ||||||||  | | |||||||| | ||||||    
T  28006475 gggatattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtgatacatcatactccctgtcagcataaact-tttgtc 28006573  T
Q  290 acatcatcagttaacagaattat 312  Q
    | |||||||||||||||||||||    
T  28006574 atatcatcagttaacagaattat 28006596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 28063778 - 28063899
Alignment:
Q  191 gggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtc 289  Q
    |||||||| ||||| |||||||  || |||||||  | |||||| |||||||||||||||||| | || ||||||||  | | |||||||| | ||||||    
T  28063778 gggatattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtgatacatcatactccctgtcagcataaact-tttgtc 28063876  T
Q  290 acatcatcagttaacagaattat 312  Q
    | |||||||||||||||||||||    
T  28063877 atatcatcagttaacagaattat 28063899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 31075170 - 31075291
Alignment:
Q  191 gggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtc 289  Q
    |||||||| |||||||||||||  || |||||||  | |||||||||||| |||||||||||| ||||||| ||||| || | | |||||||  ||||||    
T  31075170 gggatattgattttcagttcagggaccaaagtgaccactttctactttca-tttagtccttgtgacacctcgtactccttgtcaccataaaacctttgtc 31075268  T
Q  290 acatcatcagttaacagaattat 312  Q
    || ||||||||||| | ||||||    
T  31075269 acgtcatcagttaatataattat 31075291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 33315075 - 33314982
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaatt 310  Q
    |||||||  |||||||||||||||||| |||| ||| ||||||||||||| || | |||| ||||  | |||||| |||||| |||||||||||    
T  33315075 aaagtgactattttctactttcactttggtccatgtgacacctcatactccttgtcagcaaaaaacatgtgtcacttcatcacttaacagaatt 33314982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 41121322 - 41121276
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  41121322 aaagtgacaattttctactttcactttagcccttgttacacctcata 41121276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 5737058 - 5737013
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  5737058 aaagtgataattt-ctacttttactttagtccttgtgacacctcata 5737013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 32898371 - 32898417
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  32898371 aaagtgaccattttctactttcactttggtccttgtgacacctcata 32898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 18675489 - 18675206
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| |||||||||||||||||||||  | || | |||||||||| || ||||||  ||||||||  ||| ||||||| ||  |||| || | || ||    
T  18675489 ctaactgatagtaagtatgcacagtcaggaacctaacatcaagtctcccgtaaccacctaacaacttcattgaggaagataacctagttcttgacgaaga 18675390  T
Q  130 gcaacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatattattttcag-ttcagaaacgaaagtgataat 227  Q
    | |||||||  ||||||| |||||||| |||||||||||| ||  |  ||||||||||||| ||||||||| |||  | ||||   |  ||||||| |||    
T  18675389 gaaacacttctttgggacgagtttggggatattgattttcgatccaatgatattgattttcggggatattaatttttgattcaaggatcaaagtgacaat 18675290  T
Q  228 tttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||||| ||||||||||| || |||||||||||| ||| | |||||||||  |||||||||| ||||||||||| ||||||    
T  18675289 tttctactttgactttagtcct-gtgacacctcatactttttatcagcataaaacatttgtcacattatcagttaacaaaattat 18675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 14887413 - 14887499
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||  |||||||||||||||||||||| ||||||    
T  14887413 attttctactttcactttagtccctgtgacacctcatactccttgttagcataaaacatttgtcacatcatcagttaacaaaattat 14887499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 37607361 - 37607224
Alignment:
Q  176 ggatattgattttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttag 274  Q
    ||||||||||||||  ||||||| |||||  ||||||| || |||||||  ||||||||| ||||||||||||||||| ||| ||||||||  || ||||    
T  37607361 ggatattgattttcgaggatattgatttttggttcagagaccaaagtgactattttctacgttcactttagtccttgtgacatctcatacttcttgttag 37607262  T
Q  275 cataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||  |||||||| ||||||||||||| ||||||    
T  37607261 cataaaacctttgtcacgtcatcagttaacataattat 37607224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 12746111 - 12746202
Alignment:
Q  221 tgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||  |||||||||| |||| |||  ||||||||    
T  12746111 tgatcattttctactttcactttagtccctgtgacacctcatactctttgtcagcataaaacttttgtcacataatcacttactagaattat 12746202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 312
Target Start/End: Complemental strand, 38854051 - 38853877
Alignment:
Q  141 ttgggacaagtttgg-gatattgattttcaatttatggatattgattttcagggatatt--attttcagttcagaaacgaaagtgataattttctacttt 237  Q
    ||||||| ||||||| |||||||||||||  || |||||||||||| ||| |||||| |  |||||| |||||   || || | ||  ||| ||||||||    
T  38854051 ttgggacgagtttggagatattgattttcggttcatggatattgatgttcggggataattgattttcggttcaaggaccaaggcgactattatctacttt 38853952  T
Q  238 cactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    || |||||||| ||| ||||||||||||| || |||||||||||  |||||||| |||| |||||||| ||||||    
T  38853951 caatttagtccctgtgacacctcatactccttgttagcataaaacttttgtcacgtcatgagttaacataattat 38853877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 21733659 - 21733770
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatca 298  Q
    |||||| ||||||| || |||||||  ||||| |||||||||||||||| | || |||| |||||||| || | |||||||||  | |||||||||||||    
T  21733659 attttcggttcagagaccaaagtgaccattttttactttcactttagtcatcgtgacacttcatactccttgtcagcataaaacatgtgtcacatcatca 21733758  T
Q  299 gttaacagaatt 310  Q
     |||||||||||    
T  21733759 cttaacagaatt 21733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 312
Target Start/End: Complemental strand, 38855086 - 38854911
Alignment:
Q  140 gttgggacaagtttgg-gatattgattttcaatttatggatattgattttcagggatatt--attttcagttcagaaacgaaagtgataattttctactt 236  Q
    |||||||  ||||||| ||||||||||||   || |||||||||||| ||| |||||| |  |||||| |||||   || || ||||  ||| |||||||    
T  38855086 gttgggatgagtttggagatattgatttttggttcatggatattgatgttcggggataattgattttcggttcaaggaccaaggtgactattatctactt 38854987  T
Q  237 tcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||| ||||| || ||| ||||||||||||| || |||||||||| | |||||||| |||| |||||||| ||||||    
T  38854986 tcaatttagcccctgtgacacctcatactccttgttagcataaattttttgtcacgtcatgagttaacataattat 38854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 34037579 - 34037672
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaatt 310  Q
    |||||||  |||||||||| |||||||||||  ||| ||||||||||||| || | |||||||||  | ||||||||||||| |||||| ||||    
T  34037579 aaagtgactattttctactgtcactttagtctgtgtgacacctcatactccttgtcagcataaaacatgtgtcacatcatcacttaacataatt 34037672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 301
Target Start/End: Original strand, 34582435 - 34582660
Alignment:
Q  78 cgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttg-ggatattgattttcaatttatg 176  Q
    ||||||||| ||||| |||  ||| |||| ||||| ||||| || | || ||||||||||||||||| |  |||||| ||||||||||||    || | |    
T  34582435 cgcaaccactaaacagcttcattggggaatatgacccagttattgacgaagagcaacactttgttggaatgagtttgaggatattgatttatggttcaag 34582534  T
Q  177 gatattgattttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagc 275  Q
    ||||||||||||| |||||||| |||||   |||||  || ||||||   |||||||||||| |||||||| | ||| |||||||||||   || | |||    
T  34582535 gatattgattttcggggatattgattttttattcagggactaaagtggacattttctacttttactttagttcatgtgacacctcatacctcttgtcagc 34582634  T
Q  276 ataaaatgtttgtcacatcatcagtt 301  Q
    ||||||  |||| ||||| |||||||    
T  34582635 ataaaacctttgccacatgatcagtt 34582660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 14887289 - 14887395
Alignment:
Q  67 atcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttg-ggatattgatt 165  Q
    |||| ||||| |||||||||| |||||| |  ||| ||||||||||  |||| || | || ||||||||||| |||||||| |||||| |||||||||||    
T  14887289 atcaggtctcccgcaaccacagaacaacgtcattgaggaagatgacctagttcttgaagaagagcaacacttcgttgggacgagtttgaggatattgatt 14887388  T
Q  166 ttcaatt 172  Q
    || ||||    
T  14887389 tttaatt 14887395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 14886666 - 14886593
Alignment:
Q  225 aattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatca 298  Q
    |||||| |||||||| |||||||| | | || ||||||||||||| | |||||||||| |||| ||||||||||    
T  14886666 aattttgtactttcattttagtccctatgacgcctcatactctttgtcagcataaaatttttgccacatcatca 14886593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 26585282 - 26585200
Alignment:
Q  228 tttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||| |||||||||||||| ||| ||||||||||||| || | | |||||||  | ||||||||||||| |||||| ||||||    
T  26585282 tttctattttcactttagtccctgtgacacctcatactccttgtcaacataaaa--tatgtcacatcatcaattaacataattat 26585200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 12745982 - 12746026
Alignment:
Q  74 ctctcgcaaccacaaaacaactttgttgtggaagatgactcagtt 118  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||    
T  12745982 ctctcgcaaccacaaaacaacttcattgaggaagatgactcagtt 12746026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 26586071 - 26586166
Alignment:
Q  73 tctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagttt-gggatattgatttt 167  Q
    |||| |||||||||| ||||||||  | | |||| |||||  ||||||| | || |||||||||||||||||||  ||||| ||||||||||||||    
T  26586071 tctcccgcaaccacagaacaacttcatcgaggaaaatgaccaagtttttgacgaagagcaacactttgttgggatgagtttggggatattgatttt 26586166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 31443133 - 31443196
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcat 262  Q
    |||||| |||||| ||| ||| ||| |||||||||||||||||||||||  ||| |||||||||    
T  31443133 attttcggttcaggaaccaaaatgacaattttctactttcactttagtcactgtgacacctcat 31443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 33161985 - 33161939
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||| |||||||||||||| ||||||| |||| ||||||||||    
T  33161985 aaagtgatgattttctactttcattttagtctttgtgacacctcata 33161939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 39016309 - 39016355
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  39016309 aaagtgacaattttctactttcactttggtccatgtgacacctcata 39016355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26586170 - 26586231
Alignment:
Q  187 ttcagggatatta-ttttcagttcagaaacgaaagtgataattttctactttcactttagtc 247  Q
    ||||||||||||| ||||| ||||||| |   |||||| |||||||||||||||||||||||    
T  26586170 ttcagggatattaattttcggttcagagatcgaagtgacaattttctactttcactttagtc 26586231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 15441920 - 15441972
Alignment:
Q  260 catactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||||| | |||||||||  |||| ||||||||||||||||| ||||||    
T  15441920 catactctttgtcagcataaaacatttgccacatcatcagttaacaaaattat 15441972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 17466276 - 17466212
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||| |||| || ||| |||||||| |||||||||||| |||||| ||| ||| ||||||||||    
T  17466276 atttttagtttaggaaccaaagtgatcattttctacttttactttaatccatgtgacacctcata 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 37607437 - 37607361
Alignment:
Q  80 caaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttggg 156  Q
    |||||||||||||||||  ||  |||||||||| ||||| || | || ||||||||||| |||| ||| ||||||||    
T  37607437 caaccacaaaacaacttcattaaggaagatgacccagttcttgaggaagagcaacacttagttgagacgagtttggg 37607361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 263
Target Start/End: Complemental strand, 8870284 - 8870150
Alignment:
Q  131 caacactttgttgggacaagtttg-ggatattgattttcaatttatggatattgattttcagggatat-tattttcagttcagaaacgaaagtgataatt 228  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||| |||||||  ||||| |||||||  || ||||| || |||    
T  8870284 caacactttgttgggacgagtttgaggatattgattttcagtttagggatattgattttctgggatatcgatttttagttcagggaccaaagtaatcatt 8870185  T
Q  229 ttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||||||| ||||||| |||| ||||||||||    
T  8870184 ttctactttcattttagtctttgtgacacctcata 8870150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 8870844 - 8871023
Alignment:
Q  130 gcaacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatat-tattttcagttcagaaacgaaagtgataat 227  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||| |||||||  ||||| |||||||  || ||||| |  ||    
T  8870844 gcaacactttgttgggacgagtttggggatattgattttcagtttagggatattgattttctgggatatcgatttttagttcagggaccaaagtaaccat 8870943  T
Q  228 tttctactttcactttagtccttgtaacacctc--atactctttcttagcataaaatgtttgtcacatcatcagttaaca 305  Q
    |||||||||||| ||||||  |||| ||||| |  |||||| || | |||||||||  |||| |||||||| ||||||||    
T  8870944 tttctactttcattttagtttttgtgacaccacatatactccttgtcagcataaaacatttgccacatcattagttaaca 8871023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 312
Target Start/End: Complemental strand, 30918016 - 30917835
Alignment:
Q  132 aacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataattt 229  Q
    ||||||| ||||||| ||||||||| |||||||  |||   |||  ||||||||||||| | ||||||| ||||| |||| |  || || |||| |||||    
T  30918016 aacacttggttgggataagtttggggatattgaacttccgcttaacgatattgattttctgagatattaattttcggttctgggacaaacgtgacaattt 30917917  T
Q  230 tctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||| ||||||||||||||||||| |||||||||||||||| | | |||||||| |||| |||||||||||||| || ||||||    
T  30917916 tcttctttcactttagtccttgtgacacctcatactctttgtcaacataaaatctttg-cacatcatcagttagcataattat 30917835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 266
Target Start/End: Complemental strand, 24287782 - 24287648
Alignment:
Q  134 cactttgttgggacaagtttgg-gatattgattttcaatttatggatattgattttcagggatatt-attttcagttcagaaacgaaagtgataattttc 231  Q
    ||||||||| |||| ||||||  |||||||||||||  |||| |||||||||| |||||||||||| |||||  ||||||  || |||| ||  ||||||    
T  24287782 cactttgtttggacgagtttgaagatattgattttcggtttagggatattgatattcagggatattcatttttggttcagggactaaagcgaccattttc 24287683  T
Q  232 tactttcactttagtccttgtaacacctcatactc 266  Q
    ||||||||||||||||| ||| |||||||||||||    
T  24287682 tactttcactttagtccctgtgacacctcatactc 24287648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 24288781 - 24288867
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||||||| | |||||||| ||| |||| |||||||| || | |||||||||  |||||||||||||||||||||||||||||    
T  24288781 attttctacttttattttagtccatgtcacacatcatactccttgtcagcataaaacctttgtcacatcatcagttaacagaattat 24288867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 25621636 - 25621722
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||||||||||||||||||||||||||| |||| |||||| | || | |||||||||| |||| || |||||||||||||| ||||||    
T  25621636 attttctactttcactttagtccttgttacacttcataccccttgtgagcataaaatctttgccaaatcatcagttaacaaaattat 25621722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 8879360 - 8879428
Alignment:
Q  131 caacactttgttgggacaagtttgggatattgattttcaatttat--ggatattgattttcagggatat 197  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||  |||||||||||||| |||||||    
T  8879360 caacactttgttgggacgagtttgggatattgatgttcagtttatagggatattgattttcggggatat 8879428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 25621458 - 25621611
Alignment:
Q  17 ttactgtcaga-atctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactca 115  Q
    ||||||||||| | |||||| |||||||||||||||| |||   | || | | |||||||| |||||||||| ||||||||  ||| |||||||||| ||    
T  25621458 ttactgtcagagacctaactgatagtaagtatgcacaatcaagaacctaacaacaagtctcccgcaaccacagaacaacttcattgaggaagatgaccca 25621557  T
Q  116 gtttttaatgacgagcaacactttgttgggacaagtttg-ggatattgattttc 168  Q
    ||| || | || ||||||||||| |||| ||| |||||| |||||||| |||||    
T  25621558 gttcttgacgaagagcaacacttcgttgagacgagtttgaggatattggttttc 25621611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 22621344 - 22621253
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaa 308  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| | | || | |||| ||||  |||||||  ||||||||||||||||    
T  22621344 aaagtgatcattttctactttcactttagtccttgtgacacatcatgcgccttgtcagcaaaaaacatttgtcaactcatcagttaacagaa 22621253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 24288608 - 24288759
Alignment:
Q  38 tagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacact 137  Q
    |||||||||||||||||||  || || | | |||||| | |||||||||| ||||||||  ||| ||  |||| |  | | ||| | || ||||||||||    
T  24288608 tagtaagtatgcacagtcatggacctaagaacaagtcacccgcaaccacagaacaacttcattgaggtggatggcataatctttgacgaagagcaacact 24288707  T
Q  138 ttgttgggacaagtttgggatattgattttcaatttatggatattgattttc 189  Q
    |||||||||  |||||||||||||||||||   |||| ||||||| ||||||    
T  24288708 ttgttgggaggagtttgggatattgattttttgtttagggatatttattttc 24288759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 48647366 - 48647415
Alignment:
Q  214 acgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||||||  |||||||||||||||||| |||||||| ||||||||||    
T  48647366 acgaaagtgaccattttctactttcactttggtccttgtgacacctcata 48647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 330074 - 329998
Alignment:
Q  78 cgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttg 154  Q
    |||||||||| ||||||||  ||| |||||||||| ||||| || | || ||||||||||| |||||||| ||||||    
T  330074 cgcaaccacataacaacttcattgaggaagatgacccagttcttgacgaagagcaacacttcgttgggacgagtttg 329998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 2677721 - 2677755
Alignment:
Q  228 tttctactttcactttagtccttgtaacacctcat 262  Q
    ||||||||||||||||||||||||| |||||||||    
T  2677721 tttctactttcactttagtccttgtgacacctcat 2677755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 27067990 - 27067904
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||||||||||||||||||||||  ||| ||||  |||||||||| | ||||||||   |||||||||||| | |||| || ||||||    
T  27067990 attttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcacatcacccgttagcataattat 27067904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 27210323 - 27210409
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||||||||||||||||||||||  ||| ||||  |||||||||| | ||||||||   |||||||||||| | |||| || ||||||    
T  27210323 attttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcacatcacccgttagcataattat 27210409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 42477577 - 42477531
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||| |||||||||||||||||| |||| ||| ||||||||||    
T  42477577 aaagtgatcattttctactttcactttggtccctgtgacacctcata 42477531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 48788598 - 48788644
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  48788598 aaagtgaccattttctactttcactttggtccttgtgacacctcata 48788644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 35728062 - 35728029
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatct 63  Q
    |||||| |||||||||||||||||||||||||||    
T  35728062 ctaactgatagtaagtatgcacagtcagtgatct 35728029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 8048672 - 8048736
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||| ||||||  || |||||||  ||||||||||||||||||||||| ||| |||| |||||    
T  8048672 attttcggttcagggaccaaagtgaccattttctactttcactttagtccatgtgacacatcata 8048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 21622229 - 21621945
Alignment:
Q  30 ctaactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacga 129  Q
    |||||| ||||||||||||||||||||| || || | || ||||| | ||||| |||| ||||||||  ||  |||||||||   |||| |||| || ||    
T  21622229 ctaactgatagtaagtatgcacagtcagagacctaacat-aagtcacccgcaatcacataacaacttcattaaggaagatgatctagttcttaacgaaga 21622131  T
Q  130 gcaacactttgttgg-gacaagtttggg-atattgattttcaatttatggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataa 226  Q
    |||||| ||  || | | | |||||||| ||||||||||||  |||| |||||||||||||| ||||||||  ||||  |||||| ||  |||||||  |    
T  21622130 gcaacatttcatttgagccgagtttggggatattgattttcggtttagggatattgattttcggggatattggtttttggttcaggaatcaaagtgacca 21622031  T
Q  227 ttttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||| ||||||||||||||| ||||| |||| |||||||| |  | ||| |||||| |||||||||||||||||||||| ||||||    
T  21622030 ttttatactttcactttagtgcttgtgacacatcatactcctcgtcagcgtaaaatctttgtcacatcatcagttaacataattat 21621945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 32244578 - 32244689
Alignment:
Q  201 tttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagt 300  Q
    |||| |||||||||  ||||| | |||||| ||||||||||||||||  ||| ||||||||||||| || | |||||||||| |||||||| ||||| ||    
T  32244578 tttcggttcagaaatcaaagtaacaattttttactttcactttagtcactgtgacacctcatactccttgtcagcataaaatctttgtcacgtcatcggt 32244677  T
Q  301 taacagaattat 312  Q
    ||||| ||||||    
T  32244678 taacaaaattat 32244689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 2786471 - 2786345
Alignment:
Q  187 ttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtt 285  Q
    ||||| |||||| |||||| ||||||| || |||||||  |||||||||||| |||||| ||| | | |||| ||||||||||| | |||||| ||| ||    
T  2786471 ttcagagatattgattttcggttcagagaccaaagtgaccattttctacttttactttaatccatatgacacttcatactctttgtgagcatacaatctt 2786372  T
Q  286 tgtcacatcatcagttaacagaattat 312  Q
    |||||||| ||||||||||| ||||||    
T  2786371 tgtcacattatcagttaacaaaattat 2786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 24745939 - 24746057
Alignment:
Q  176 ggatattgattttcagggatattattttcag-ttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttag 274  Q
    |||||||||||||  ||||||||| |||| | |||||  || ||||||||||||||||| |||||||||||||  ||| ||||||||| ||||||   ||    
T  24745939 ggatattgattttttgggatattaatttccggttcagggaccaaagtgataattttctattttcactttagtctgtgtgacacctcattctcttttccag 24746038  T
Q  275 cataaaatgtttgtcacat 293  Q
    |||||||  ||||||||||    
T  24746039 cataaaacttttgtcacat 24746057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 32244533 - 32244396
Alignment:
Q  176 ggatattgattttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttag 274  Q
    ||||||||||||||  ||||||| |||||| || |||| |  |||||||  ||||| ||||||||||||||||  ||| ||||| |||||||||| | ||    
T  32244533 ggatattgattttcgaggatattgattttcggtgcagagatcaaagtgaccattttttactttcactttagtctctgtgacaccccatactctttgtcag 32244434  T
Q  275 cataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||  || ||| | |||||| |||||| ||||||    
T  32244433 cataaaaccttcgtcgcgtcatcacttaacataattat 32244396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 26172836 - 26172895
Alignment:
Q  207 ttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactc 266  Q
    ||||| ||| |||||||| |||||||||| ||||||||||| |||| |||||||||||||    
T  26172836 ttcaggaactaaagtgattattttctactgtcactttagtcattgtgacacctcatactc 26172895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 21623023 - 21623118
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||  |||||||||||||| |||||||  ||| ||||||||||||| || | || ||||||  | || |||||||| |||||||| ||||||    
T  21623023 aaagtgaccattttctactttcattttagtctctgtgacacctcatactccttgtcagtataaaacttgtgccacatcattagttaacataattat 21623118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 24753435 - 24753562
Alignment:
Q  187 ttcagggatatta-ttttcagttcagaaacgaaagtgataattttct-actttcactttagtccttgtaacacctcatactctttcttagcataaaatgt 284  Q
    ||||||||||||| |||||  || ||| || ||||||| |||||| | |||||||||||||||   || ||||||||  ||||||   |||||||||  |    
T  24753435 ttcagggatattaattttcgatttagagactaaagtgacaatttttttactttcactttagtctccgtgacacctcaatctctttgacagcataaaactt 24753534  T
Q  285 ttgtcacatcatcagttaacagaattat 312  Q
    ||| ||||||||||||||||| ||||||    
T  24753535 ttgccacatcatcagttaacaaaattat 24753562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 19050453 - 19050407
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||| ||||| ||||||||||||||||| ||| ||||||||||    
T  19050453 aaagtgatcattttatactttcactttagtccatgtgacacctcata 19050407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 31844870 - 31844928
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagc 275  Q
    |||||||  ||||| ||||||||||||||||||||| |||| |||||||| || |||||    
T  31844870 aaagtgaccattttttactttcactttagtccttgtgacacgtcatactccttgttagc 31844928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 42391794 - 42391855
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctc 260  Q
    ||||| |||||||  || |||||||  ||||||||||||||||||||||| ||| |||||||    
T  42391794 atttttagttcagggactaaagtgaccattttctactttcactttagtccatgtgacacctc 42391855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 6039338 - 6039250
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaaca 305  Q
    |||||||  |||||||||  ||||||| |||| | | ||||||||||||| || | |||||||||| | |||||| |||||| ||||||    
T  6039338 aaagtgaccattttctacactcactttggtccctatgacacctcatactcattgtcagcataaaatatgtgtcacgtcatcatttaaca 6039250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 312
Target Start/End: Original strand, 50106971 - 50107204
Alignment:
Q  81 aaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactttgttgggacaagtttggg-atattgattttcaatttatggat 179  Q
    ||||||||||||||||  ||| |||||||||  ||||| || | || ||| |||| || |||||||| |||||||| ||||||||||||  |||| ||||    
T  50106971 aaccacaaaacaacttcattgaggaagatgatccagttattgacgaagagtaacaattcgttgggacgagtttggggatattgattttcggtttagggat 50107070  T
Q  180 attgattttcagggatatta-ttttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcata 278  Q
    |||||||||  ||||||||| ||||| ||| |   || |||||||  || | |||||||||| ||||||| ||| ||||||||||||| || | ||||||    
T  50107071 attgatttttggggatattaattttcggttaaaggaccaaagtgaccatgtcctactttcacgttagtccatgtgacacctcatactccttgtcagcata 50107170  T
Q  279 aaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||  |||||||  ||||||||||||| ||||||    
T  50107171 aaacctttgtcatgtcatcagttaacataattat 50107204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 1407932 - 1407802
Alignment:
Q  132 aacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatatta-ttttcagttcagaaacgaaagtgataattt 229  Q
    ||||||| |||||||| |||||||  ||||| ||||||  || ||||||||||||||||| |||||||| ||||| |||||   || |||||||||||||    
T  1407932 aacacttcgttgggacgagtttggacatatttattttcggttcatggatattgattttcaaggatattaattttcggttcaaggaccaaagtgataattt 1407833  T
Q  230 tctactttcactttagtccttgtaacacctc 260  Q
    ||||||||||||||||||| ||| |||||||    
T  1407832 tctactttcactttagtccatgtgacacctc 1407802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 29766182 - 29766045
Alignment:
Q  176 ggatattgattttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttag 274  Q
    |||||||||||||| |||||||| |||||  ||||||  || ||||||| ||||||||| ||||||||||||   | | |||||||||||| ||| | ||    
T  29766182 ggatattgattttcggggatattgattttttgttcagggaccaaagtgacaattttctattttcactttagtaactatgacacctcatactatttgtcag 29766083  T
Q  275 cataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||  ||||| ||||||||| |||||| ||||||    
T  29766082 cataaaacatttgttacatcatcaattaacaaaattat 29766045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 11060519 - 11060678
Alignment:
Q  31 taactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgag 130  Q
    ||||| |||||||||||||||| |||||||||| | | |||||||| |||||||||| ||||||||  ||| ||||||| ||  |||| ||   || |||    
T  11060519 taactgatagtaagtatgcacaatcagtgatctaacagcaagtctcccgcaaccacataacaacttcattgaggaagattacctagttcttggcgaagag 11060618  T
Q  131 caacactttgttgggacaagtttg-ggatattgattttcaatttatggatattgattttc 189  Q
    ||||||||  ||| ||| ||||||  |||||||||||||  || | ||||||||||||||    
T  11060619 caacacttcattgcgacgagtttgtagatattgattttcggttcagggatattgattttc 11060678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 312
Target Start/End: Complemental strand, 44719658 - 44719472
Alignment:
Q  128 gagcaacactttgttgggacaagtttggg-atattgattttcaatttatggatattgattttcagggatatt-attttcagttcagaaacgaaagtgata 225  Q
    ||||||||||| ||||| || |||||||| ||||| |||| |  || | ||||||| ||||||||||||||| |||||||||||||  |  ||||||| |    
T  44719658 gagcaacacttagttggtacgagtttggggatattaatttccggttcagggatattaattttcagggatattgattttcagttcagggagcaaagtgaca 44719559  T
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||||||||| |||||| | ||| |||| |  ||| | || |||||||||||  |||| |||| ||||| | |||| ||||||    
T  44719558 attttctactttcattttagttcatgtgacacattgtaccccttgttagcataaaacctttgccacaacatcaatgaacaaaattat 44719472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 8975376 - 8975281
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||  ||||||||||||||||||||||| ||| ||| ||||||||| || |  ||||||||  ||||||| ||||||| |||||| ||||||    
T  8975376 aaagtgaccattttctactttcactttagtccctgtgacatctcatactccttgtcggcataaaacatttgtcatatcatcaattaacaaaattat 8975281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 11060660 - 11060785
Alignment:
Q  187 ttcagggatatt-attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtt 285  Q
    |||||||||||| |||||| ||||||  |  ||||||| ||||||||||||||||||||||| |||| | ||||||||| | || | || ||||||  ||    
T  11060660 ttcagggatattgattttctgttcagggatcaaagtgacaattttctactttcactttagtcattgtga-acctcataccccttgtcagaataaaacctt 11060758  T
Q  286 tgtcacatcatcagttaacagaattat 312  Q
    |  ||| ||||||||||||||||||||    
T  11060759 ttccacgtcatcagttaacagaattat 11060785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 11060005 - 11059846
Alignment:
Q  31 taactcatagtaagtatgcacagtcagtgatcttaaatcaagtctctcgcaaccacaaaacaactttgttgtggaagatgactcagtttttaatgacgag 130  Q
    ||||| ||| |||||||| ||||||| ||| || | |||||||||| | |||||||| ||||||||    | |||||||||| || || ||||  | |||    
T  11060005 taactgataataagtatgtacagtcaatgacctaacatcaagtctccctcaaccacagaacaacttcaacgaggaagatgacacaattcttaacaaagag 11059906  T
Q  131 caacactttgttgggacaagttt-gggatattgattttcaatttatggatattgattttc 189  Q
    |||||||| |||| |||||||||  |||||||||||| |  |||| ||||||| ||||||    
T  11059905 caacacttcgttgagacaagtttaaggatattgatttgcggtttagggatattaattttc 11059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 25038098 - 25038052
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||||||||||||||||||||||||| | ||| ||||||||||    
T  25038098 aaagtgataattttctactttcactttagttcatgtgacacctcata 25038052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 25043310 - 25043264
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||||||||||||||||||||||||| | ||| ||||||||||    
T  25043310 aaagtgataattttctactttcactttagttcatgtgacacctcata 25043264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 33342602 - 33342538
Alignment:
Q  248 cttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    ||||| ||||||||||||| || | |||||||||  ||||||||||||||| |||||| ||||||    
T  33342602 cttgtgacacctcatactccttgtcagcataaaacttttgtcacatcatcacttaacataattat 33342538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 44720735 - 44720799
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||| |||||  ||| ||||||| |||||||||||||||||||||||  ||| ||||||||||    
T  44720735 attttcggttcaagaaccaaagtgacaattttctactttcactttagtcagtgtgacacctcata 44720799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 3117862 - 3117820
Alignment:
Q  221 tgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||| |||||||||||||||||||||| |||| ||||||||||    
T  3117862 tgatcattttctactttcactttagtcattgtgacacctcata 3117820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 7944352 - 7944306
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    ||||||||||||||||||||||||||| |||  ||| ||||||||||    
T  7944352 aaagtgataattttctactttcactttggtctatgtgacacctcata 7944306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 22856906 - 22856851
Alignment:
Q  206 gttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||| ||| |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  22856906 gttcaggaactaaagtgatcattttctactttcactttagtc--tgtgacacctcata 22856851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 32665696 - 32665742
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||  |||||||||||||||||| |||||||| ||||||||||    
T  32665696 aaagtgaccattttctactttcactttggtccttgtgacacctcata 32665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 51450215 - 51450171
Alignment:
Q  219 agtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||| |||||||||||||| |||||||| ||| ||||||||||    
T  51450215 agtgatcattttctactttcagtttagtccctgtgacacctcata 51450171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 24621294 - 24621249
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcat 262  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  24621294 aaagtgatcattttctactttcattttagtccttgtaacacctcat 24621249  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 5265411 - 5265325
Alignment:
Q  221 tgataattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacaga 307  Q
    |||| ||||| ||||||||||||| ||| ||| ||||||||| | | || |||||| ||||  |||||||| |||||| ||||||||    
T  5265411 tgattattttttactttcactttactccatgtgacacctcatgcaccttgttagcacaaaacatttgtcacctcatcaattaacaga 5265325  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 36827390 - 36827476
Alignment:
Q  226 attttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaattat 312  Q
    |||||||| |||||||||||||| ||| | || |||  ||| |||| |||||||||  ||||||||||||||| |||||| ||||||    
T  36827390 attttctattttcactttagtccctgtgatacttcacgctccttctcagcataaaacatttgtcacatcatcacttaacaaaattat 36827476  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 33427928 - 33427888
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacac 257  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  33427928 aaagtgataattttctactttcactttagtccatgtgacac 33427888  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 48809581 - 48809627
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||||  ||||||||||||||||||||||||| | ||||||||||    
T  48809581 aaagtgaccattttctactttcactttagtccttctgacacctcata 48809627  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 3671247 - 3671162
Alignment:
Q  225 aattttctactttcactttagtccttgtaacacctcatactctttcttagcataaaatgtttgtcacatcatcagttaacagaatt 310  Q
    ||||||||||||||||||||||||  || |||  |||||| | || | |||||||||  | ||||||||||||| |||||| ||||    
T  3671247 aattttctactttcactttagtccccgtgacatgtcataccccttgtcagcataaaacatgtgtcacatcatcacttaacataatt 3671162  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 19114710 - 19114670
Alignment:
Q  217 aaagtgataattttctactttcactttagtccttgtaacac 257  Q
    |||||||  ||||||||||||||||||||||||||| ||||    
T  19114710 aaagtgaccattttctactttcactttagtccttgtgacac 19114670  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 55389377 - 55389441
Alignment:
Q  199 attttcagttcagaaacgaaagtgataattttctactttcactttagtccttgtaacacctcata 263  Q
    |||||| ||||||  || |||||||  |||||||||||||||||| |||| ||| ||||||||||    
T  55389377 attttcggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 55389441  T

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