View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_24 (Length: 315)
Name: NF18065_low_24
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 44429247 - 44429518
Alignment:
| Q |
37 |
attacaaaaatggactcctttaaagtttatgcaatcaagaggttcaaaagcaaaatattttaggatggattacaaatgcaacatcataaattcacaactt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44429247 |
attacaaaaatggactcctttaaagtttatgcaatcaagaggttcaaaagcaaaatattttaggatggattacaaatgcaacatcataaattcacaactt |
44429346 |
T |
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| Q |
137 |
gttttaaacaggcaatttttaatgcatgggaattnnnnnnnnnnnnnnnnnntatatataaatgtgttaacattaataagtagcactgtcattcattctg |
236 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44429347 |
gttttaaacaggcaatttttaatgcatgggaatt-aaaaagagaaaaaaaaatatatataaatgtgttaacat---taagtagcactgtcattcattctg |
44429442 |
T |
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| Q |
237 |
tcaggagnnnnnnngtctgagtgggaattatgggcattcacctttttcaaagtggggacttgctcatgttagagag |
312 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44429443 |
tcaggagaaaaaaagtctgagtgggaattatgggcattcacctttttcaaagtggggacttgctcatgttacagag |
44429518 |
T |
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