View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_27 (Length: 301)
Name: NF18065_low_27
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 25467433 - 25467168
Alignment:
| Q |
23 |
tgcattgttcgtgaatgaatacgatacgacattaacattcatcgtttcacagtcgcatcaatggcggttaacgccgatcgcttccatgattcaaacccta |
122 |
Q |
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| T |
25467433 |
tgcattgttcgtgaatgaatatgatacaacattaacattcatcgtttcacagtcgcatcaatggctgttaacgccgatcgcttccaagattcaaacccta |
25467334 |
T |
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| Q |
123 |
aaacttgcgttgttttaggcggaagaggattcatcggaaaatcattagtcttacagctcttgaaactcggtaactggatcgtccgaatcgccgattccac |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25467333 |
aaacttgcgttgttttaggcggaagaggattcatcgggaaatcattagtcttacagctcttgaaactcggaaactggatcgtccgaatcgccgattccac |
25467234 |
T |
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| Q |
223 |
tcactctctcaaccttcaccactccgaatctctcctcgctgaagctctctcttcttcccgcgcttc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467233 |
tcactctctcaaccttcaccactccgaatctctcctcgctgaagctctctcttcttcccgcgcttc |
25467168 |
T |
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