View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_28 (Length: 293)

Name: NF18065_low_28
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_28
NF18065_low_28
[»] chr4 (31 HSPs)
chr4 (14-277)||(28929594-28929857)
chr4 (151-271)||(5609227-5609347)
chr4 (123-271)||(40058877-40059025)
chr4 (150-271)||(34844783-34844904)
chr4 (123-278)||(54127360-54127515)
chr4 (123-170)||(37980145-37980192)
chr4 (123-170)||(56409982-56410029)
chr4 (89-182)||(29195093-29195186)
chr4 (152-271)||(32990488-32990607)
chr4 (90-173)||(4088242-4088324)
chr4 (91-166)||(38206127-38206201)
chr4 (150-271)||(52983670-52983791)
chr4 (123-223)||(13771555-13771656)
chr4 (98-170)||(37492715-37492785)
chr4 (123-170)||(21344848-21344895)
chr4 (123-170)||(25434656-25434703)
chr4 (91-169)||(37109349-37109427)
chr4 (153-271)||(45787729-45787847)
chr4 (123-169)||(7093400-7093446)
chr4 (150-271)||(27528820-27528941)
chr4 (154-271)||(34723854-34723971)
chr4 (123-161)||(42281240-42281278)
chr4 (123-223)||(25852238-25852338)
chr4 (123-164)||(31141347-31141388)
chr4 (150-270)||(33696305-33696425)
chr4 (98-182)||(37455576-37455660)
chr4 (123-182)||(5998672-5998732)
chr4 (123-202)||(13873388-13873468)
chr4 (98-182)||(32475080-32475163)
chr4 (123-170)||(32992643-32992691)
chr4 (123-170)||(46295128-46295176)
[»] chr2 (24 HSPs)
chr2 (90-278)||(43963882-43964065)
chr2 (123-277)||(26176217-26176370)
chr2 (149-271)||(15038009-15038131)
chr2 (174-276)||(35943759-35943861)
chr2 (123-170)||(6099516-6099563)
chr2 (174-271)||(28668949-28669045)
chr2 (123-171)||(26482124-26482172)
chr2 (150-280)||(17324817-17324946)
chr2 (90-170)||(29503270-29503350)
chr2 (122-167)||(32526214-32526259)
chr2 (123-171)||(3697396-3697444)
chr2 (123-167)||(8192480-8192524)
chr2 (91-193)||(42327368-42327471)
chr2 (123-222)||(43374399-43374498)
chr2 (150-223)||(30466903-30466976)
chr2 (150-271)||(33827598-33827719)
chr2 (150-271)||(44946078-44946199)
chr2 (209-278)||(41329952-41330021)
chr2 (90-193)||(42602553-42602657)
chr2 (214-278)||(7250339-7250402)
chr2 (90-169)||(19322767-19322846)
chr2 (123-167)||(19605974-19606018)
chr2 (137-188)||(30943134-30943186)
chr2 (123-167)||(38341761-38341805)
[»] chr5 (24 HSPs)
chr5 (123-272)||(15485315-15485464)
chr5 (123-278)||(32059458-32059613)
chr5 (135-278)||(31206278-31206422)
chr5 (98-171)||(16172980-16173052)
chr5 (174-278)||(4603853-4603956)
chr5 (123-281)||(16247016-16247174)
chr5 (150-271)||(8484686-8484807)
chr5 (150-271)||(27498756-27498877)
chr5 (123-272)||(33025504-33025653)
chr5 (123-278)||(19145430-19145584)
chr5 (123-270)||(30485852-30485999)
chr5 (150-271)||(19456236-19456355)
chr5 (123-278)||(12398466-12398621)
chr5 (123-278)||(31287964-31288119)
chr5 (123-170)||(31669022-31669069)
chr5 (100-166)||(14656645-14656710)
chr5 (174-272)||(22253168-22253266)
chr5 (150-271)||(38684259-38684379)
chr5 (123-164)||(32340340-32340381)
chr5 (123-219)||(36895449-36895545)
chr5 (130-166)||(8780509-8780545)
chr5 (177-269)||(9659338-9659429)
chr5 (123-193)||(16773838-16773910)
chr5 (235-279)||(24158183-24158227)
[»] chr3 (43 HSPs)
chr3 (90-278)||(34844370-34844556)
chr3 (123-278)||(48977412-48977567)
chr3 (149-280)||(51532839-51532970)
chr3 (149-268)||(7470244-7470362)
chr3 (135-227)||(27887464-27887557)
chr3 (93-274)||(10682837-10683017)
chr3 (150-271)||(15566525-15566645)
chr3 (123-169)||(31714348-31714394)
chr3 (150-271)||(35492962-35493083)
chr3 (93-171)||(42799744-42799821)
chr3 (150-271)||(49258287-49258408)
chr3 (174-271)||(10083844-10083940)
chr3 (174-271)||(10190767-10190863)
chr3 (123-172)||(18316494-18316543)
chr3 (123-271)||(30257648-30257796)
chr3 (152-280)||(53233926-53234054)
chr3 (91-170)||(11092167-11092245)
chr3 (150-271)||(8456175-8456296)
chr3 (197-274)||(10538148-10538225)
chr3 (89-170)||(40268487-40268567)
chr3 (235-279)||(3869845-3869889)
chr3 (123-167)||(35623267-35623311)
chr3 (235-274)||(26599450-26599489)
chr3 (149-271)||(40133474-40133596)
chr3 (239-278)||(40302664-40302703)
chr3 (149-223)||(53288785-53288859)
chr3 (123-200)||(7485620-7485698)
chr3 (93-170)||(19716199-19716276)
chr3 (150-271)||(25379812-25379933)
chr3 (150-271)||(26174164-26174285)
chr3 (174-224)||(39604682-39604732)
chr3 (150-271)||(46576399-46576520)
chr3 (150-271)||(52821661-52821781)
chr3 (123-169)||(53863866-53863912)
chr3 (150-254)||(25289756-25289860)
chr3 (124-169)||(40777045-40777090)
chr3 (123-171)||(54990733-54990782)
chr3 (123-171)||(7207641-7207689)
chr3 (98-170)||(15034352-15034423)
chr3 (123-170)||(16900678-16900726)
chr3 (90-170)||(43303757-43303836)
chr3 (123-167)||(50162067-50162111)
chr3 (237-277)||(53167684-53167724)
[»] chr6 (18 HSPs)
chr6 (122-279)||(17149473-17149630)
chr6 (123-271)||(9208276-9208424)
chr6 (123-278)||(6383892-6384047)
chr6 (150-271)||(11448922-11449043)
chr6 (150-271)||(9239026-9239147)
chr6 (123-271)||(15360123-15360271)
chr6 (150-271)||(654171-654292)
chr6 (150-271)||(1344986-1345107)
chr6 (127-169)||(6691549-6691591)
chr6 (150-271)||(12390476-12390597)
chr6 (152-271)||(34147399-34147518)
chr6 (152-271)||(34160015-34160134)
chr6 (123-193)||(14557993-14558064)
chr6 (124-167)||(28741970-28742013)
chr6 (150-271)||(3222661-3222781)
chr6 (177-271)||(9690663-9690756)
chr6 (127-171)||(3433598-3433642)
chr6 (123-182)||(28028561-28028621)
[»] chr1 (29 HSPs)
chr1 (89-278)||(37046983-37047171)
chr1 (149-278)||(30677226-30677355)
chr1 (91-212)||(39964505-39964626)
chr1 (127-273)||(2755594-2755741)
chr1 (91-170)||(15581139-15581217)
chr1 (150-271)||(4621262-4621383)
chr1 (150-271)||(24122074-24122195)
chr1 (150-271)||(24674444-24674565)
chr1 (123-223)||(9500428-9500528)
chr1 (123-170)||(4825002-4825050)
chr1 (122-170)||(6127984-6128032)
chr1 (150-261)||(8077698-8077809)
chr1 (214-274)||(20999185-20999245)
chr1 (123-170)||(31605845-31605893)
chr1 (123-166)||(24217002-24217045)
chr1 (123-170)||(38939233-38939280)
chr1 (150-271)||(7766752-7766873)
chr1 (150-223)||(15059475-15059548)
chr1 (153-278)||(16899557-16899682)
chr1 (123-172)||(21273471-21273521)
chr1 (89-167)||(39012289-39012366)
chr1 (135-193)||(52029909-52029970)
chr1 (122-167)||(13857843-13857888)
chr1 (127-168)||(18928367-18928408)
chr1 (90-171)||(39714775-39714855)
chr1 (123-164)||(47360517-47360558)
chr1 (90-169)||(11063555-11063634)
chr1 (235-271)||(27159221-27159257)
chr1 (123-167)||(44417462-44417506)
[»] chr8 (31 HSPs)
chr8 (123-278)||(18128541-18128696)
chr8 (123-271)||(4718673-4718821)
chr8 (150-271)||(28193529-28193650)
chr8 (123-227)||(26168918-26169021)
chr8 (123-188)||(40136942-40137007)
chr8 (210-278)||(9126481-9126549)
chr8 (90-188)||(16852339-16852438)
chr8 (91-170)||(6530807-6530885)
chr8 (137-223)||(24339696-24339782)
chr8 (149-271)||(2166753-2166872)
chr8 (150-271)||(32879334-32879455)
chr8 (150-271)||(34237680-34237801)
chr8 (150-271)||(39349311-39349432)
chr8 (93-169)||(3624582-3624658)
chr8 (123-271)||(3734648-3734796)
chr8 (90-188)||(18897165-18897264)
chr8 (123-279)||(34639225-34639379)
chr8 (123-188)||(11979283-11979350)
chr8 (126-169)||(29855417-29855460)
chr8 (122-223)||(27746408-27746509)
chr8 (90-170)||(19703484-19703564)
chr8 (123-164)||(22779686-22779727)
chr8 (91-167)||(33727873-33727949)
chr8 (237-278)||(34694593-34694634)
chr8 (123-167)||(9126584-9126628)
chr8 (90-166)||(22268935-22269010)
chr8 (91-162)||(26688865-26688936)
chr8 (90-169)||(28566104-28566182)
chr8 (90-169)||(28573727-28573805)
chr8 (123-170)||(28787493-28787541)
chr8 (152-271)||(34610712-34610831)
[»] scaffold0623 (1 HSPs)
scaffold0623 (150-280)||(1072-1202)
[»] scaffold0366 (2 HSPs)
scaffold0366 (150-280)||(9315-9445)
scaffold0366 (175-270)||(12027-12120)
[»] scaffold0015 (1 HSPs)
scaffold0015 (155-278)||(72544-72670)
[»] chr7 (32 HSPs)
chr7 (91-170)||(25956290-25956368)
chr7 (149-278)||(654723-654851)
chr7 (150-271)||(22119943-22120064)
chr7 (150-271)||(40542935-40543056)
chr7 (123-271)||(2751299-2751447)
chr7 (89-183)||(43215182-43215277)
chr7 (147-231)||(1469164-1469248)
chr7 (91-169)||(33869443-33869521)
chr7 (150-271)||(7275332-7275453)
chr7 (150-271)||(18044162-18044283)
chr7 (150-271)||(22703541-22703662)
chr7 (147-279)||(11909971-11910103)
chr7 (150-223)||(36772376-36772448)
chr7 (91-170)||(5579231-5579310)
chr7 (174-270)||(23012534-23012629)
chr7 (126-193)||(25132352-25132420)
chr7 (150-280)||(10091243-10091373)
chr7 (91-169)||(26459408-26459486)
chr7 (150-271)||(27009414-27009536)
chr7 (235-278)||(38372998-38373041)
chr7 (150-271)||(2103110-2103230)
chr7 (204-278)||(23636583-23636657)
chr7 (236-277)||(674455-674496)
chr7 (123-271)||(11997877-11998025)
chr7 (122-167)||(22696347-22696392)
chr7 (235-279)||(1766161-1766205)
chr7 (174-278)||(2344379-2344482)
chr7 (235-279)||(12211552-12211596)
chr7 (150-269)||(21217860-21217979)
chr7 (123-170)||(22760894-22760942)
chr7 (123-167)||(28646997-28647041)
chr7 (126-170)||(46279048-46279092)
[»] scaffold0019 (1 HSPs)
scaffold0019 (150-271)||(161860-161981)
[»] scaffold0576 (1 HSPs)
scaffold0576 (123-271)||(5107-5255)
[»] scaffold0016 (1 HSPs)
scaffold0016 (175-280)||(32365-32469)
[»] scaffold0189 (1 HSPs)
scaffold0189 (127-171)||(17720-17764)
[»] scaffold0459 (1 HSPs)
scaffold0459 (175-270)||(10720-10813)
[»] scaffold0221 (1 HSPs)
scaffold0221 (122-187)||(2888-2955)
[»] scaffold0026 (1 HSPs)
scaffold0026 (235-278)||(5967-6010)
[»] scaffold0070 (1 HSPs)
scaffold0070 (150-271)||(40376-40496)
[»] scaffold0049 (1 HSPs)
scaffold0049 (209-278)||(66864-66933)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 28929594 - 28929857
Alignment:
Q  14 gaagtggagtgataagggtggtcttgagatcgactcccaactcaacaaatactaacaaattaacatattaacgttaaaacccatttgggttgacctagta 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28929594 gaagtggagtgataagggtggtcttgagatcgactcccacctcaacaaatactaacaaattaacatattaacgttaaaacccatttgggttgacctagta 28929693  T
Q  114 gtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28929694 gtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattccccttatgccaatttgggtggtctaagttcatacaaagctatgctt 28929793  T
Q  214 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28929794 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 28929857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 5609347 - 5609227
Alignment:
Q  151 ggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgg 249  Q
    ||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||||||| ||    
T  5609347 ggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtggacggtggg 5609249  T
Q  250 attggacccctcagattagtcg 271  Q
    ||||  |||||| |||||||||    
T  5609248 attgatcccctcggattagtcg 5609227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 40059025 - 40058877
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||| |  |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  40059025 ttgggatcttggagtttgctcctctagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 40058927  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||||||| |||| ||||||| |||||| |||||||||    
T  40058926 aacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcg 40058877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 34844904 - 34844783
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  34844904 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 34844806  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  34844805 gattggtcccctcggattagtcg 34844783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 54127515 - 54127360
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   |||||||||||||| |||| | ||| ||||||||| ||||| ||||||  ||||| |||| |||| ||||||||    
T  54127515 ttgggatcttggagtttgctcctccaaaggtctcaggttcaattccctcttgtgccaatttcggtgggctaagtctatacagagct-tgctctggcttta 54127417  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    || | |||||   ||||||| |||| ||||||| |||||| ||||||||||| ||||    
T  54127416 aacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggttcttg 54127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 37980192 - 37980145
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  37980192 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 37980145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 56409982 - 56410029
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  56409982 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 56410029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 29195093 - 29195186
Alignment:
Q  89 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaattt 182  Q
    |||||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||||||||    
T  29195093 aaaacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattt 29195186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 32990488 - 32990607
Alignment:
Q  152 gtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgga 250  Q
    |||||||||||||||| | ||| ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |||    
T  32990488 gtctcaggttcgattccctttagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtggga 32990586  T
Q  251 ttggacccctcagattagtcg 271  Q
    |||| |||||| || ||||||    
T  32990587 ttggtcccctcggactagtcg 32990607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 4088242 - 4088324
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta 173  Q
    |||||||||||||||| ||  || ||||| |||| |  |||||| || ||| ||||||||||||||||||||||||||||||||    
T  4088242 aaacccatttgggttggccgcgtggtgttggctt-gaaaccttggagggtggtcctttcaaggtctcaggttcgattctcctta 4088324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 38206201 - 38206127
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 166  Q
    |||||| |||||||||||| || ||| | |||| ||||||||| ||||||||||| ||||||||||||||| ||||    
T  38206201 aacccacttgggttgacctggtggtgctggctt-gggaccttggagtgtgctcctctcaaggtctcaggtttgatt 38206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 52983670 - 52983791
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  |||||||||  |||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  52983670 aggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 52983768  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  52983769 gattggtcccctcggattagtcg 52983791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 13771656 - 13771555
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||||||| ||||| | |||||||||||  |||||||| | || ||| |||| | ||||| |||||| ||||| |||||||||| ||||||||    
T  13771656 ttgggatcttgaagtttgctcatctcaaggtctcaaattcgattccctctgatgtcaatctcggtgggctaagtccatacgaagctatgctctggcttta 13771557  T
Q  222 aa 223  Q
    ||    
T  13771556 aa 13771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 37492785 - 37492715
Alignment:
Q  98 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||| ||| |||||||| |  ||||||||||| |||||| |||| |||||||||||||||||| |||||    
T  37492785 ttgggttggcctggtagtgttgg--ttgggaccttggagtgtgatcctctcaaggtctcaggttcgactctcc 37492715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 21344848 - 21344895
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| ||||||||||| |||| |||||||    
T  21344848 ttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctcc 21344895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 25434703 - 25434656
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| |||||||| || ||||||||||||||| ||||||||    
T  25434703 ttgggaccttggagtgtgcttctctcaaggtctcaggtttgattctcc 25434656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 37109427 - 37109349
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 169  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  |||||||||||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 37109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 45787847 - 45787729
Alignment:
Q  153 tctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggat 251  Q
    ||||||||||||||| | || ||||||||||  |||| |||||| |||||| |||| |||| ||||||||||   |||||   |||||||||||| ||||    
T  45787847 tctcaggttcgattccctctgatgccaatttcagtgggctaagtccatacagagct-tgctctggctttaaacagggcccccgcaagtggacggtgggat 45787749  T
Q  252 tggacccctcagattagtcg 271  Q
    ||| ||||||  ||||||||    
T  45787748 tggtcccctcgaattagtcg 45787729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 7093400 - 7093446
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    |||||| |||| ||||||||||||||||||| | |||||||||||||    
T  7093400 ttgggatcttggagtgtgctcctttcaaggttttaggttcgattctc 7093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 27528941 - 27528820
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||| | | |||||   ||||||| ||||      
T  27528941 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttatacggggcccccgcaagtgggcggtga 27528843  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  27528842 gattggtcccctcggattagtcg 27528820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 34723854 - 34723971
Alignment:
Q  154 ctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggatt 252  Q
    |||||||||||||| | ||  ||||||||| ||||| |||||| ||||||||||| |||| |||||||||| | |||||   |||||||  ||| |||||    
T  34723854 ctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacaaagct-tgctctggctttaaacggggcccccgcaagtgggtggtgggatt 34723952  T
Q  253 ggacccctcagattagtcg 271  Q
    || || ||| |||||||||    
T  34723953 ggtcctctcggattagtcg 34723971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 42281278 - 42281240
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggtt 161  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  42281278 ttgggaccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 25852238 - 25852338
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  25852238 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 25852336  T
Q  222 aa 223  Q
    ||    
T  25852337 aa 25852338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 31141388 - 31141347
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 164  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  31141388 ttgggaccttggagtgtgctcctctcaaggtctgaggttcga 31141347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 33696425 - 33696305
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    ||||||||||||| |||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   ||||||| ||||      
T  33696425 aggtctcaggttcaattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtgggcggtga 33696327  T
Q  249 gattggacccctcagattagtc 270  Q
    |||||| || ||| ||||||||    
T  33696326 gattggtcctctcggattagtc 33696305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 37455576 - 37455660
Alignment:
Q  98 ttgggttgacctagtagtgttagctttgggacctt-gaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaattt 182  Q
    |||||||| ||| || ||||| |||| |||||||| | ||| ||||||| ||||||||||||||||||||| |||  |||||||||    
T  37455576 ttgggttggcctggtggtgttggctt-gggacctttggagtatgctcctctcaaggtctcaggttcgattcccctggtgccaattt 37455660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 5998732 - 5998672
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcg-attctccttatgccaattt 182  Q
    ||||||||||| ||||||||||| |||||||||||  |||| || |||||| |||||||||    
T  5998732 ttgggaccttggagtgtgctcctctcaaggtctcacattcgaatcctccttgtgccaattt 5998672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 13873468 - 13873388
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcataca 202  Q
    |||||| |||| ||| ||||||||  ||||||||||||||||||| | ||  ||||||||| ||| | |||||||||||||    
T  13873468 ttgggatcttggagtttgctccttcaaaggtctcaggttcgattccctctggtgccaatttcggtaggctaagttcataca 13873388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 32475163 - 32475080
Alignment:
Q  98 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaattt 182  Q
    ||||||||  ||||| ||||| |||| |||||| || ||||  ||||| ||||||||||||||||||||||| || | |||||||    
T  32475163 ttgggttggtctagtggtgttggctt-gggaccctggagtgaactcctctcaaggtctcaggttcgattctctttgtaccaattt 32475080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 32992643 - 32992691
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  32992643 ttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctcc 32992691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 46295128 - 46295176
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||| ||| |||||||||||  ||||||||||||||||||||||||    
T  46295128 ttgggacattggagtgtgctcctcctcaaggtctcaggttcgattctcc 46295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 43964065 - 43963882
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtgg 188  Q
    ||||||| ||||||||  ||||||||||| | |||||||||||| ||||||||||| ||||||||||| ||| ||||| || | ||    |||| |||||    
T  43964065 aaacccacttgggttggtctagtagtgttgg-tttgggaccttggagtgtgctcctctcaaggtctcatgtttgattccccctgat----atttcggtgg 43963971  T
Q  189 tctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
      || ||||||||||| || |||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  43963970 gtta-gttcatacaaaactttgctttggttttaaatgagccccatgcaagtggacggtgggattggacccctcagattagttggtccttg 43963882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 277
Target Start/End: Complemental strand, 26176370 - 26176217
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||||||||  |||||||||| |||||||||||| ||||||||||| |  ||||||||| ||||| ||| || |||||| | || |||||||| ||||    
T  26176370 ttgggaccttggggtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggccta-gtccatacagacctttgctttggattta 26176272  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 277  Q
    |||| |||||   |||||||||||| ||||||||||| ||||||||||||||||||    
T  26176271 aatg-ggcccccgcaagtggacggtgggattggacccttcagattagtcggtcctt 26176217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 15038009 - 15038131
Alignment:
Q  149 aaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| ||||||||||||||| |  ||||   ||||||| ||||     
T  15038009 aaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctttggctttaaacggagcccccgcaagtgggcggtg 15038107  T
Q  248 ggattggacccctcagattagtcg 271  Q
    ||||||| ||||||||||||||||    
T  15038108 ggattggtcccctcagattagtcg 15038131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 35943759 - 35943861
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggt 273  Q
    ||||||||| ||| | |||||| ||||||  |||||| |||||||||||||   |||| | |||||||||||| |||||||||||||| ||||||| |||    
T  35943759 tgccaattttggtaggctaagtccatacagtgctatgatttggctttaaattgagcccctgcaagtggacggtgggattggacccctcggattagttggt 35943858  T
Q  274 cct 276  Q
    |||    
T  35943859 cct 35943861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 6099563 - 6099516
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6099563 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 6099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 28668949 - 28669045
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    ||||||||| ||||| |||||| |||||| |||| ||||||||||||||| | |||||   ||||||| |||| ||||||| |||||| |||||||||    
T  28668949 tgccaatttcggtggactaagtccatacagagct-tgctttggctttaaacggggcccccacaagtgggcggtgggattggtcccctcggattagtcg 28669045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 26482124 - 26482172
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  26482124 ttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctcct 26482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 17324817 - 17324946
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   ||||||| |||| |    
T  17324817 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatg-ggcccccacaagtgggcggtgg 17324914  T
Q  249 gattggacccctcagattagtcggtccttgat 280  Q
    |||| | ||||||| |||||||| | ||||||    
T  17324915 gattagtcccctcaaattagtcgattcttgat 17324946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 29503270 - 29503350
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||| |||||||| |||||| || || | |||||||||| | |||||||||||  ||||||||||||||||||||||||    
T  29503270 aaacccacttgggttggcctagtggtattgg-tttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 29503350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 32526259 - 32526214
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||    
T  32526259 tttgggatcttgaagtttgctcctctcaaggtctcaggttcgattc 32526214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 3697444 - 3697396
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    ||||||||||| || |||||||| |||||||||| ||||||||||||||    
T  3697444 ttgggaccttggagagtgctcctctcaaggtctctggttcgattctcct 3697396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 8192524 - 8192480
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||    
T  8192524 ttgggatcttggagtgtgctcctctcaaggtctcaggttcgattc 8192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 42327471 - 42327368
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcct-tatgccaatttgggtgg 188  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  ||||||||||||||||||||||| |   |||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgg 42327373  T
Q  189 tctaa 193  Q
     ||||    
T  42327372 gctaa 42327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 43374498 - 43374399
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||| | ||  ||||||||| ||||| ||||||| |||||||||| |||| ||||||||    
T  43374498 ttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtttatacaaagct-tgctctggcttta 43374400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 30466976 - 30466903
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 223  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  30466976 aggtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 30466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 33827719 - 33827598
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| | ||| |||||| |||||| |||| |||| |||||||||| | | ||| | ||||||| |||| |    
T  33827719 aggtctcaggttcgattccctctggtgccaatttcgttgggctaagtccatacagagct-tgctctggctttaaacgggacccctgcaagtgggcggtgg 33827621  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||  |||||||||    
T  33827620 gattggtccccttggattagtcg 33827598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 44946199 - 44946078
Alignment:
Q  150 aggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| | || |||| |||||||||| | | |||   ||||||| |||| |    
T  44946199 aggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagaact-tgctctggctttaaacgggccccccgcaagtgggcggtgg 44946101  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  44946100 gattggtcccctcggattagtcg 44946078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 41329952 - 41330021
Alignment:
Q  209 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||| |||||||||||| |||||   ||||||| ||||  |||||| |||||||||||||||||| ||||    
T  41329952 tgctctggctttaaatggggcccccacaagtgggcggtgagattggtcccctcagattagtcggttcttg 41330021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 42602553 - 42602657
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttgggtg 187  Q
    ||||||| |||||||| |||||| || || |||| ||||||| | |||||||||||| ||||||||| ||||| ||||||| |   ||||||||||||||    
T  42602553 aaacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtg 42602651  T
Q  188 gtctaa 193  Q
    | ||||    
T  42602652 ggctaa 42602657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 7250339 - 7250402
Alignment:
Q  214 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||||||| |||||  | |||||||| || |||||||||||||| |||||||| |||||||    
T  7250339 tggctttaaatg-ggccccctaaagtggacagtgggattggacccctcggattagtccgtccttg 7250402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 19322767 - 19322846
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 169  Q
    ||||||| ||||||||| ||||| || || | |||||||||| | ||||||||||| ||||||||||| |||| |||||||    
T  19322767 aaacccacttgggttgatctagtggtattgg-tttgggacctgggagtgtgctcctcttcaaggtctctggtttgattctc 19322846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 19606018 - 19605974
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||| |||| |||| |||||| |||||||||||||||||||||    
T  19606018 ttgggatcttggagtgcgctcctctcaaggtctcaggttcgattc 19605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 30943134 - 30943186
Alignment:
Q  137 tgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtgg 188  Q
    ||||||||| ||||||||||| ||| ||||||| ||||||||||||| |||||    
T  30943134 tgtgctcctctcaaggtctcaagtttgattctctcttatgccaatttcggtgg 30943186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 38341761 - 38341805
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||| |||||||| ||||||| |||||||||||| ||||||||    
T  38341761 ttgggatcttgaagtttgctcctctcaaggtctcagattcgattc 38341805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 15485464 - 15485315
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaa 222  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||| |  ||||||| |||||  ||||| |||||||| ||||| | |||||||||    
T  15485464 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattcccctgacaccaatttcggtgggttaagtccatacaaaactatgttctggctttaa 15485365  T
Q  223 atgaggcccattcaagtggacggttggattggacccctcagattagtcgg 272  Q
    ||| || ||   |||||||| ||| |||||||||||||| ||||||||||    
T  15485364 atggggtccccgcaagtggatggtgggattggacccctcggattagtcgg 15485315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 32059613 - 32059458
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc-tccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  32059613 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 32059515  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    || | |||||   ||||||| |||| ||||||| |||||| ||||||||||||||||    
T  32059514 aacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggtccttg 32059458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 31206278 - 31206422
Alignment:
Q  135 agtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccat 233  Q
    ||||||||||  |||||||||||||||  |||| || |  |||||||||   ||| |||||| |||||| ||||||||| | |||||||||| | |||      
T  31206278 agtgtgctccgctcaaggtctcaggttttattccccctggtgccaatttcattggcctaagtccatacagagctatgctcttgctttaaatgggaccccc 31206377  T
Q  234 tcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
     |||||||||||| ||||||||| |||| ||||||||||||||||    
T  31206378 acaagtggacggtgggattggactcctcggattagtcggtccttg 31206422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 16173052 - 16172980
Alignment:
Q  98 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    |||||||| ||| |||||||| |||| | ||||||| ||||||||||| |||||||||||||||||||||||||    
T  16173052 ttgggttggcctggtagtgttggctt-gagaccttggagtgtgctcctctcaaggtctcaggttcgattctcct 16172980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 4603853 - 4603956
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggt 273  Q
    ||||||||| | ||| |||||| |||||| ||||  ||| |||||||||| | ||||| | |||||||||||| ||||||| |||||| |||||||||||    
T  4603853 tgccaatttcgatgggctaagtccatacagagctc-gctctggctttaaacggggcccctgcaagtggacggtgggattggtcccctcggattagtcggt 4603951  T
Q  274 ccttg 278  Q
    |||||    
T  4603952 ccttg 4603956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 281
Target Start/End: Complemental strand, 16247174 - 16247016
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgat-tctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||  | ||   ||||||| | ||||| || ||| |||||| | || |||||||| ||||    
T  16247174 ttgggaccttgcagtgtgctcctatcaaggtctcaggttcaatcccccccggtgccaatcttggtgggct-agtccatacagaactttgctttgggttta 16247076  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttgatg 281  Q
    |||| |  ||   |||||||||||| |||||||||||||| |||||||||| ||| ||||    
T  16247075 aatgggctccccacaagtggacggtgggattggacccctcggattagtcggccctcgatg 16247016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 8484807 - 8484686
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||| ||||| | ||  ||||||||| ||||| ||||||||||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  8484807 aggtctcaggtttgattccctctggtgccaatttcggtgggctaagttcatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 8484709  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  8484708 gattggtcccctcggattagtcg 8484686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 27498877 - 27498756
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  27498877 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacatagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 27498779  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  27498778 gattggtcccctcggattagtcg 27498756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 33025504 - 33025653
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||||||||||| ||||| |||||  || ||||| |||| ||||| |||| | |||  ||||| |||||||||||||||| ||||||||    
T  33025504 ttgggatcttggagtgtgctcctctcaagatctcaactttgattccccttgatgccgatttcgatggattaagtccatacaaagctatgctctggcttta 33025603  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcgg 272  Q
    ||| ||||||   ||||||||||   |||| |||| |||| ||||||||||    
T  33025604 aat-aggcccccacaagtggacgacgggatgggacgcctcggattagtcgg 33025653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 19145584 - 19145430
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||| |||||||||| |||||||||| | ||  ||||||||| ||||| | |||| |||||| |||| |||| ||||||||    
T  19145584 ttgggatcttggagtatgctcctctcaaggtctccggttcgattccctctggtgccaatttcggtgggc-aagtccatacagagctttgctctggcttta 19145486  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||| | |||   ||||||| |||| ||||||| |||||| ||||||| ||| ||||    
T  19145485 aatg-gtcccccgcaagtgggcggtgggattggtcccctcggattagttggttcttg 19145430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 270
Target Start/End: Original strand, 30485852 - 30485999
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||| | ||  || |||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  30485852 ttgggatcttggagtttgctccttcagaggtctcaggttcgattcactctggtgtcaatttcggtgggctaagtccatacagagct-tgctctggcttta 30485950  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtc 270  Q
    || || ||||   ||||||| |||| ||||||| |||||| ||||||||    
T  30485951 aacgatgcccccgcaagtgggcggtgggattggtcccctcggattagtc 30485999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 19456355 - 19456236
Alignment:
Q  150 aggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgg 249  Q
    |||||||||||||||| |  ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| ||    
T  19456355 aggtctcaggttcgatccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggccc-cgcaagtgggcggtggg 19456258  T
Q  250 attggacccctcagattagtcg 271  Q
    ||||| |||||| |||||||||    
T  19456257 attggtcccctcggattagtcg 19456236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 12398621 - 12398466
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| |  |  || |||||| ||||| ||||||||||||| |||| |||| ||||||||    
T  12398621 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctatggtgtcaatttcggtggcctaagttcatacagagct-tgctctggcttta 12398523  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||| |||||   ||| ||||||||  |||||  || |||| |||||||||| ||||    
T  12398522 aatggggcccccgcaaatggacggtgagattgatcctctcaaattagtcggttcttg 12398466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 31288119 - 31287964
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||| ||||||||| | ||  ||||||||| |||||  ||||| ||||||||||| ||||||| |||||    
T  31288119 ttgggatcttggagtttgctcctccaaaggtctcatgttcgattccctttggtgccaatttcggtgggttaagtccatacaaagct-tgctttgacttta 31288021  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    || | |||||   ||||||| |||| ||||||| | ||||  |||||||||| ||||    
T  31288020 aacggggcccccgcaagtgggcggtgggattggtctcctcgaattagtcggttcttg 31287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 31669069 - 31669022
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  31669069 ttgggaccttggagtctgctcctctcaaggtcttaggttcgattctcc 31669022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 14656710 - 14656645
Alignment:
Q  100 gggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 166  Q
    |||||||||| || ||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||    
T  14656710 gggttgacctggttgtgttggctt-gagaccttggagtttgctcctctcaaggtctcaggttcgatt 14656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 22253266 - 22253168
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcgg 272  Q
    ||||||||| | ||| |||||| |||||||||||||| | ||| ||||||||||||||   ||| ||||| |  ||||| | ||||||| |||||||||    
T  22253266 tgccaatttcgatgggctaagtccatacaaagctatgttctggatttaaatgaggcccccacaactggacagcgggattcgtcccctcaaattagtcgg 22253168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 38684259 - 38684379
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||  |||| |    
T  38684259 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacg-ggcccccgcaagtgagcggtgg 38684356  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  38684357 gattggtcccctcggattagtcg 38684379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 32340381 - 32340340
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 164  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  32340381 ttgggaccttggagtgtgctcctctcaaggtcttaggttcga 32340340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 36895449 - 36895545
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctt 219  Q
    |||||| |||| ||||||||||| ||||||| ||| ||||||||| | ||  | ||||||| ||||||| |||| ||||||||||| |||| ||||||    
T  36895449 ttgggatcttggagtgtgctcctctcaaggtttcatgttcgattccctctggtaccaatttcggtggtc-aagtccatacaaagctttgctctggctt 36895545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 8780509 - 8780545
Alignment:
Q  130 cttgaagtgtgctcctttcaaggtctcaggttcgatt 166  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  8780509 cttggagtgtgctcctctcaaggtctcaggttcgatt 8780545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 9659429 - 9659338
Alignment:
Q  177 caatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagt 269  Q
    |||||| ||||| |||||| |||||| |||| |||| |||||||||||| | |||   |||||||||||| ||||||| ||| || |||||||    
T  9659429 caatttcggtgggctaagtccatacacagct-tgctctggctttaaatgggccccccgcaagtggacggtgggattggtcccttcggattagt 9659338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 16773838 - 16773910
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaa 193  Q
    ||||||||| | |||||||||||  || |||||||||||||||||||| || |||||||||| ||||| ||||    
T  16773838 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaa 16773910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 24158227 - 24158183
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    ||||||| ||||  |||||| ||||||||||||||||||||||||    
T  24158227 caagtgggcggtgagattggtcccctcagattagtcggtccttga 24158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 278
Target Start/End: Original strand, 34844370 - 34844556
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc--tccttatgccaatttgggtg 187  Q
    ||||||| |||||||| ||| ||  |||| |||| | ||||||| ||||||||||| |||||||||||||||||||||  |||  | |||||||| ||||    
T  34844370 aaacccacttgggttgccctggtgttgttggctt-gagaccttggagtgtgctcctctcaaggtctcaggttcgattccctccaga-gccaatttcggtg 34844467  T
Q  188 gtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    | ||| || |||||| |||| |||| |||||||||||| |||||   |||||||| ||| |||||||||||||| ||||||||||||||||    
T  34844468 gacta-gtacatacagagctttgctatggctttaaatg-ggcccccgcaagtggatggtgggattggacccctcggattagtcggtccttg 34844556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 48977412 - 48977567
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc-tccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| |||||  ||||| |||||| |||| |||| ||||||||    
T  48977412 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtgggttaagtccatacagagct-tgctctggcttta 48977510  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    || | ||||| | ||||||| |||| ||||||| |||||| ||||||||||||||||    
T  48977511 aacggggcccctgcaagtgggcggtgggattggtcccctcggattagtcggtccttg 48977567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 51532839 - 51532970
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||| ||||||||||| || |||||||||| ||||| |||||| |||||| |||| |||| |  ||||||||| | |||   ||||||||||||     
T  51532839 aaggtctcatgttcgattctctctaatgccaatttcggtgggctaagtccatacagagct-tgctctaactttaaatgggacccccgcaagtggacggtg 51532937  T
Q  248 ggattggacccctcagattagtcggtccttgat 280  Q
    ||||||| |||||||||||||||||| ||||||    
T  51532938 ggattggtcccctcagattagtcggttcttgat 51532970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 7470362 - 7470244
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||||||||||||| | || |||||||||| ||||| ||||||||||||| |||| |||| |||||||||| | ||||| | ||||||| | ||     
T  7470362 aaggtctcaggttcgattccctctaatgccaatttcggtgggctaagttcatacagagct-tgctctggctttaaacggggccc-tgcaagtgggcagtg 7470265  T
Q  248 ggattggacccctcagattag 268  Q
    ||||||| |||||||||||||    
T  7470264 ggattggtcccctcagattag 7470244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 27887464 - 27887557
Alignment:
Q  135 agtgtgctcctttcaaggtctcaggttcgattc-tccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgag 227  Q
    |||||||| || |||| |||| ||||||||||| |||||||| |||||| ||||| |||||| |||||  |||||||||||| |||||||||||    
T  27887464 agtgtgcttctctcaatgtcttaggttcgattcctccttatgtcaattttggtgggctaagtccatacgcagctatgctttgcctttaaatgag 27887557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 274
Target Start/End: Complemental strand, 10683017 - 10682837
Alignment:
Q  93 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtct 191  Q
    |||| ||||||||| ||||| || || |||| | ||||||| |||||||| || |||| ||||||||||| |||||||||  | |||||||  | || ||    
T  10683017 cccacttgggttgatctagtggtattggctt-gagaccttggagtgtgcttctctcaaagtctcaggttcaattctccttggtcccaatttcagcgggct 10682919  T
Q  192 aagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtc 274  Q
    | || ||||||||||| |||  | |||||||||| | || |  ||||||||| || ||||||||||||||| |||||||||||    
T  10682918 a-gtccatacaaagctttgcgctagctttaaatgggacctacacaagtggacagtgggattggacccctcaaattagtcggtc 10682837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 15566645 - 15566525
Alignment:
Q  150 aggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| |  || ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  15566645 aggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacg-ggcccccgcaagtgggcggtgg 15566548  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| ||||||||||||||||    
T  15566547 gattggtcccctcagattagtcg 15566525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 31714348 - 31714394
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  31714348 ttgggaccttgaagtgtgctcctctcaaggtctcaagttcgattctc 31714394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 35492962 - 35493083
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  35492962 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 35493060  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  35493061 gattggtcccctcggattagtcg 35493083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 42799821 - 42799744
Alignment:
Q  93 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    |||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  42799821 cccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtctcaggttcgactctcct 42799744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 49258408 - 49258287
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  49258408 aggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccacaagtgggcggtgg 49258310  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  49258309 gattggtcccctcggattagtcg 49258287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 10083940 - 10083844
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   |||||||||||| ||||||| |||||| |||||||||    
T  10083940 tgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccacaagtggacggtgggattggtcccctcggattagtcg 10083844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 10190863 - 10190767
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   |||||||||||| ||||||| |||||| |||||||||    
T  10190863 tgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagtcg 10190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 18316543 - 18316494
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt 172  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  18316543 ttgggaccttggagtgtgctcctctcaaggtcttaggttcgattctcctt 18316494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 30257648 - 30257796
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctta-tgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| | ||| |||||| |||||| |||| |||| ||||||||    
T  30257648 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcgatggactaagtccatacagagct-tgctctggcttta 30257746  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    |||| |||||   ||||||| |||| | ||||| |||||| |||||||||    
T  30257747 aatggggcccccgcaagtgggcggtggcattggtcccctcggattagtcg 30257796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 53234054 - 53233926
Alignment:
Q  152 gtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgga 250  Q
    |||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||| |||| | |||||   ||||||| |||| |||    
T  53234054 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctctaaacggggcccccgcaagtgggcggtggga 53233956  T
Q  251 ttggacccctcagattagtcggtccttgat 280  Q
    |||| |||||| ||||||||| | ||||||    
T  53233955 ttggtcccctcggattagtcgattcttgat 53233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 11092245 - 11092167
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||| |||||||| |||||| ||||| |||| ||||||||| |||||||| || |||||||||||  |||||||||||    
T  11092245 aacccacttgggttggcctagtggtgttggctt-gggaccttgtagtgtgctactctcaaggtctcaacttcgattctcc 11092167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 8456296 - 8456175
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| | || |    
T  8456296 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcagtgg 8456198  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  8456197 gattggtcccctcggattagtcg 8456175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 10538225 - 10538148
Alignment:
Q  197 catacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtc 274  Q
    ||||||||||| |||| | |||||||||| | || |  ||||||||| || ||||||||||||||| |||||||||||    
T  10538225 catacaaagctttgctctagctttaaatgggacctacgcaagtggacagtgggattggacccctcaaattagtcggtc 10538148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 40268487 - 40268567
Alignment:
Q  89 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||| |||||||  ||| || ||||| |||| ||||||||| |||| |||||| | ||||||||||||||||||||||    
T  40268487 aaaacccacttgggtttgcctggtggtgttggctt-gggaccttggagtgggctcctcttaaggtctcaggttcgattctcc 40268567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3869845 - 3869889
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||    
T  3869845 caagttgacagtgggattggacccctcagattagtcggtccttga 3869889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 35623311 - 35623267
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  35623311 ttgggaccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 26599450 - 26599489
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtc 274  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  26599450 caagtggacggtgggattggacccctcagattggtcggtc 26599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 40133596 - 40133474
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||||||||||||| | ||  || |||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| ||||     
T  40133596 aaggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtg 40133498  T
Q  248 ggattggacccctcagattagtcg 271  Q
    ||||||| ||||||  ||||||||    
T  40133497 ggattggtcccctcgaattagtcg 40133474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 40302703 - 40302664
Alignment:
Q  239 tggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  40302703 tggacggtgggattggacccctcaaattagtcggtccttg 40302664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 53288859 - 53288785
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 223  Q
    ||||||||||| ||||||| | ||  ||||||||| ||||| |||||| ||||||||||| |||||||||||||||    
T  53288859 aaggtctcaggctcgattccctctggtgccaatttcggtggactaagtccatacaaagct-tgctttggctttaaa 53288785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 7485698 - 7485620
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcata 200  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | || |||||||||| ||||| |||||||||||    
T  7485698 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctgatgccaatttcggtgggctaagttcata 7485620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 19716199 - 19716276
Alignment:
Q  93 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||||||||||| | || ||||| |||| |||||| || |||||||||||  |||||||||| |||||||||||||    
T  19716199 cccatttgggttgacatggtggtgttggctt-gggaccatggagtgtgctcctcctcaaggtctctggttcgattctcc 19716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 25379812 - 25379933
Alignment:
Q  150 aggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    ||||||||||||||||| || ||  ||||||||| || || |||||| |||||| |||| |||| |||||||||| | |||||   |||| || |||| |    
T  25379812 aggtctcaggttcgattccttctagtgccaatttcggagggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagcgggcggtgg 25379910  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  25379911 gattggtcccctcggattagtcg 25379933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 26174164 - 26174285
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||  | ||  ||||||||| |||||  ||||| |||||| |||| |||| |||||||||||  |||||   ||||||| |||| |    
T  26174164 aggtctcaggttcgatttcctctggtgccaatttcggtgggttaagtccatacagagct-tgctctggctttaaatagggcccccgcaagtgggcggtgg 26174262  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  26174263 gattggtcccctcggattagtcg 26174285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 39604732 - 39604682
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaat 224  Q
    ||||||||| ||||| |||||| |||| ||| |||||||||||||||||||    
T  39604732 tgccaattttggtggactaagtccatataaatctatgctttggctttaaat 39604682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 46576399 - 46576520
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  |||||||||  |||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  46576399 aggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtcg 46576497  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||  |||||||||    
T  46576498 gattggtccccttggattagtcg 46576520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 52821781 - 52821661
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||  |||||| |||||| |||| |||| |||||||||| | |||||  | |||||| |||| |    
T  52821781 aggtctcaggttcgattccctctggtgccaatttcggtgagctaagtccatacagagct-tgctctggctttaaacggggccccgt-aagtgggcggtgg 52821684  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  52821683 gattggtcccctcggattagtcg 52821661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 53863912 - 53863866
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  53863912 ttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctc 53863866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 25289860 - 25289756
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  25289860 aggtctcaggttcgattccctctagtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 25289762  T
Q  249 gattgg 254  Q
    ||||||    
T  25289761 gattgg 25289756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 40777045 - 40777090
Alignment:
Q  124 tgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    |||||| ||| ||||||||||| ||||||||||||||| |||||||    
T  40777045 tgggacattggagtgtgctcctctcaaggtctcaggtttgattctc 40777090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 54990733 - 54990782
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcct 171  Q
    ||||||||||| || ||||||||  |||||||||||||||||||||||||    
T  54990733 ttgggaccttggagcgtgctcctcctcaaggtctcaggttcgattctcct 54990782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 7207641 - 7207689
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    |||||||||||||| ||| |||| | ||||| |||||||||||||||||    
T  7207641 ttgggaccttgaagggtgatcctcttaaggtttcaggttcgattctcct 7207689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 15034352 - 15034423
Alignment:
Q  98 ttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||| ||| || ||||| || ||||||||||| || ||| |||| |||||||||||||||| |||||||    
T  15034352 ttgggttggcctggtggtgtt-gccttgggaccttggagggtgatcctctcaaggtctcaggttcaattctcc 15034423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 16900726 - 16900678
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  16900726 ttgggaccttggagtgtgctcctcgtcaaggtctcatgttcgattctcc 16900678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 43303757 - 43303836
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||||||||||| ||| || ||| | |||| | ||||||| || |||||||| || |||||||||||| ||||||||    
T  43303757 aaacccatttgggttggcctggtggtgatggctt-gagaccttggagcgtgctcctctccaggtctcaggtttgattctcc 43303836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 50162067 - 50162111
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||| ||||||||| |||||| |||||||||||| ||||||||    
T  50162067 ttgggatcttgaagtgcgctcctctcaaggtctcagattcgattc 50162111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 53167724 - 53167684
Alignment:
Q  237 agtggacggttggattggacccctcagattagtcggtcctt 277  Q
    |||||||||| ||||||| |||||| |||||||||||||||    
T  53167724 agtggacggtgggattgggcccctcggattagtcggtcctt 53167684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 17149630 - 17149473
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttt 220  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||| | ||  ||| ||||| ||| | | |||| |||||| |||  ||||||||||||    
T  17149630 tttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgctaatttcggttggc-aagtccatacagagccttgctttggcttt 17149532  T
Q  221 aaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    ||||| |||||   |||||| ||||| ||||||| ||||||  ||||||||||||||||    
T  17149531 aaatggggcccccgcaagtgaacggtgggattggtcccctcgaattagtcggtccttga 17149473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 9208276 - 9208424
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||| |||||||||||||||||||| | |||  ||||||||| ||||| | |||| |||||| |||  |||||||||||||    
T  9208276 ttgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggc-aagtccatacagagccttgctttggcttta 9208374  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    |||| |||||   ||||||| |||| ||||||| | ||||||| ||||||    
T  9208375 aatggggcccccgcaagtgggcggtgggattggtctcctcagaatagtcg 9208424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 6384047 - 6383892
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaa 222  Q
    ||||||||||| ||||||||||| |||||||||||||||| || |  |   |||||||||  |||| ||| || |||| | |||| ||||||||||||||    
T  6384047 ttgggaccttggagtgtgctcctctcaaggtctcaggttcaatccctcgggtgccaatttcagtgggcta-gtccataaagagctttgctttggctttaa 6383949  T
Q  223 atgaggcccattcaagtggacggttggatt-ggacccctcagattagtcggtccttg 278  Q
    ||| | |||   ||||||||| || ||||| |||||||||||||||||| |||||||    
T  6383948 atgggacccccacaagtggacagtgggatttggacccctcagattagtcagtccttg 6383892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 11448922 - 11449043
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  11448922 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 11449020  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  11449021 gattggtcccctcggattagtcg 11449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 9239026 - 9239147
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| |||||  ||||| |||| | |||| ||||||||||||||||| |||||   ||||||| |||| |    
T  9239026 aggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatatagagct-tgctttggctttaaatggggcccccgcaagtgggcggtgg 9239124  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  9239125 gattggtcccctcggattagtcg 9239147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 15360271 - 15360123
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  15360271 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 15360173  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||| ||| |||| ||||||| |||||| |||||||||    
T  15360172 aacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcg 15360123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 654292 - 654171
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | ||| |   ||||||| |||| |    
T  654292 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggctcccgcaagtgggcggtgg 654194  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  654193 gattggtcccctcggattagtcg 654171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 1344986 - 1345107
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  |||||||||  |||| |||||| ||||||||||| |||| |||||||||| | | |||   |||||||||||| |    
T  1344986 aggtctcaggttcgattccctctggtgccaatttcagtgggctaagtccatacaaagct-tgctctggctttaaacgggccccccgcaagtggacggtgg 1345084  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||  |||||||||    
T  1345085 gattggtccccttggattagtcg 1345107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 6691591 - 6691549
Alignment:
Q  127 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    ||||||| ||||||||||| |||||||||||||||||||||||    
T  6691591 gaccttggagtgtgctcctctcaaggtctcaggttcgattctc 6691549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 12390476 - 12390597
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||   |||||   ||||||| |||| |    
T  12390476 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacagggcccccgcaagtgggcggtgg 12390574  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  12390575 gattggtcccctcggattagtcg 12390597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 34147399 - 34147518
Alignment:
Q  152 gtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgga 250  Q
    |||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | | |||   ||||||| |||| |||    
T  34147399 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacgggccccccgcaagtgggcggtggga 34147497  T
Q  251 ttggacccctcagattagtcg 271  Q
    |||| |||||| |||||||||    
T  34147498 ttggtcccctcggattagtcg 34147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 34160015 - 34160134
Alignment:
Q  152 gtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgga 250  Q
    |||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | | |||   ||||||| |||| |||    
T  34160015 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacgggccccccgcaagtgggcggtggga 34160113  T
Q  251 ttggacccctcagattagtcg 271  Q
    |||| |||||| |||||||||    
T  34160114 ttggtcccctcggattagtcg 34160134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 14557993 - 14558064
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctccttatgccaatttgggtggtctaa 193  Q
    ||||||||| |||||||||||||  ||  ||||||||||||||||||||   || |||||||||||||||||    
T  14557993 ttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctcccggtgtcaatttgggtggtctaa 14558064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 28742013 - 28741970
Alignment:
Q  124 tgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||| |||| ||||||||||| |||||||||||||||||||||    
T  28742013 tgggatcttggagtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 3222781 - 3222661
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| || ||||||| | |||||   ||||||| |||| |    
T  3222781 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctgtctttaaacggggccc-cgcaagtgggcggtgg 3222684  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  3222683 gattggtcccctcggattagtcg 3222661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 9690756 - 9690663
Alignment:
Q  177 caatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    |||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   |||||||||||| ||||||| || ||| |||||||||    
T  9690756 caatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggccctcacaagtggacggtgggattggtcctctcggattagtcg 9690663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 3433642 - 3433598
Alignment:
Q  127 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||    
T  3433642 gaccttggagtttgctcctctcaaggtctcaggttcgattttcct 3433598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 28028561 - 28028621
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattct-ccttatgccaattt 182  Q
    ||||||||||  |||| |||||| ||||||||||| |||||||||| ||| ||||||||||    
T  28028561 ttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaattt 28028621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 278
Target Start/End: Original strand, 37046983 - 37047171
Alignment:
Q  89 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtg 187  Q
    |||||||| ||||||||  || || ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||| | |||  | | ||||| ||||    
T  37046983 aaaacccacttgggttggtctggtggtgttggctt-gggaccttggagtgtgctcctctcaaggtctcaggtttgattccccctggtacaaattttggtg 37047081  T
Q  188 gtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    | || ||| |||||| |||| |||| | |||||||||| |||||   |||||||||||| |||||||||||||  |||||||||| |||||    
T  37047082 ggct-agtccatacagagctttgctctagctttaaatggggcccccacaagtggacggtgggattggacccctaggattagtcggcccttg 37047171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 30677226 - 30677355
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||||||| ||||| | ||  ||||||||| ||||| |||||| |||||| |||| ||||||||||||||||| | |||   ||||||| ||||     
T  30677226 aaggtctcaggtttgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctttggctttaaatgggacccccgcaagtgggcggtg 30677324  T
Q  248 ggattggacccctcagattagtcggtccttg 278  Q
    ||||||| |||||||||||||||||| ||||    
T  30677325 ggattggtcccctcagattagtcggttcttg 30677355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 39964505 - 39964626
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggt 189  Q
    |||| |||||||||| |||||  ||||| |||| | ||||||| ||||||||||| ||||||||||||||| ||||| | ||  ||||||||| |||||     
T  39964505 aaccaatttgggttggcctagaggtgttggctt-gcgaccttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaatttcggtggg 39964603  T
Q  190 ctaagttcatacaaagctatgct 212  Q
    || |||||| ||| |||||||||    
T  39964604 ctgagttcacacagagctatgct 39964626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 2755594 - 2755741
Alignment:
Q  127 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatg 225  Q
    ||||||||||| ||||| | ||||||||| ||||| |||| || ||  | ||||||  |||||  |||||||||||||||||||| | ||||||||||||    
T  2755594 gaccttgaagtatgctcatctcaaggtcttaggtttgattatctctgttaccaattgtggtgggttaagttcatacaaagctatgttatggctttaaatg 2755693  T
Q  226 aggcccattcaagtggacggttggattggacccctcagattagtcggt 273  Q
       |||    ||||||||||| ||||||||| ||||  ||||||||||    
T  2755694 gccccctcataagtggacggtgggattggactcctcgaattagtcggt 2755741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 15581217 - 15581139
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||||| | |||||||||||||| |||||||    
T  15581217 aacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctctaaaggtctcaggttcaattctcc 15581139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 4621383 - 4621262
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | || ||   ||||||| |||| |    
T  4621383 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggtccccgcaagtgggcggtgg 4621285  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  4621284 gattggtcccctcggattagtcg 4621262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 24122074 - 24122195
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | ||| |   ||||||| |||| |    
T  24122074 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggctcccgcaagtgggcggtgg 24122172  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  24122173 gattggtcccctcggattagtcg 24122195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 24674444 - 24674565
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  24674444 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 24674542  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| ||||||  ||||||||    
T  24674543 gattggtcccctcgtattagtcg 24674565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 9500528 - 9500428
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  9500528 ttgggatcttggagtttgctccttcagaggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 9500430  T
Q  222 aa 223  Q
    ||    
T  9500429 aa 9500428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 4825002 - 4825050
Alignment:
Q  123 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  4825002 ttgggaccttggagtgtgctcctcttcaaggtctcaggtttgattctcc 4825050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 6128032 - 6127984
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||||||| || |||||||| ||||||||||| ||||||||||||    
T  6128032 tttgggaccttggagcgtgctcctctcaaggtctcaagttcgattctcc 6127984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 8077698 - 8077809
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||   |||||   ||||||| |||| |    
T  8077698 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacagggcccccgcaagtgggcggtgg 8077796  T
Q  249 gattggacccctc 261  Q
    |||||| ||||||    
T  8077797 gattggtcccctc 8077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 20999245 - 20999185
Alignment:
Q  214 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtc 274  Q
    ||||||||||| |||| |  ||||||||||||| | |||||||||||| ||||||||||||    
T  20999245 tggctttaaataaggctccctcaagtggacggtggtattggacccctcggattagtcggtc 20999185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 31605893 - 31605845
Alignment:
Q  123 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 170  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  31605893 ttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctcc 31605845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 24217002 - 24217045
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 166  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||    
T  24217002 ttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 24217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 38939233 - 38939280
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  38939233 ttgggaccttggagtgtgctcctctcaaggtctctggtttgattctcc 38939280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 7766873 - 7766752
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||| ||||| ||||| |||||| |||||| |||| |||| || ||||||| | |||||   ||||||| |||| |    
T  7766873 aggtctcaggttcgattccctctggtgctaatttcggtgggctaagtccatacagagct-tgctctgactttaaacggggcccccgcaagtgggcggtgg 7766775  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  7766774 gattggtcccctcggattagtcg 7766752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 15059548 - 15059475
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 223  Q
    |||||||||||||||||||| ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||    
T  15059548 aggtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaa 15059475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 278
Target Start/End: Original strand, 16899557 - 16899682
Alignment:
Q  153 tctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggat 251  Q
    ||||||||||||||| | ||  ||||||||| ||||| | | || ||||||||||| |||| ||| ||  || | ||||| | ||||||||||||  |||    
T  16899557 tctcaggttcgattccctctggtgccaatttcggtgggcca-gtccatacaaagctttgctctggtttagaacggggcccctgcaagtggacggtgagat 16899655  T
Q  252 tggacccctcagattagtcggtccttg 278  Q
    ||| |||||| ||||||||||||||||    
T  16899656 tggtcccctcggattagtcggtccttg 16899682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 21273471 - 21273521
Alignment:
Q  123 ttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcctt 172  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  21273471 ttgggaccttgaagtgtggtcctcttcaaggtctcggattcgattctcctt 21273521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 39012289 - 39012366
Alignment:
Q  89 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||||| || ||||| |||||| ||||| |||| ||||||||| ||||||||| | ||||||||| ||||| |||||    
T  39012289 aaaacccactttggttggcctagtggtgttggctt-gggaccttggagtgtgctcttctcaaggtcttaggtttgattc 39012366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 52029970 - 52029909
Alignment:
Q  135 agtgtgctcctt-tcaaggtctcaggttcgattct--ccttatgccaatttgggtggtctaa 193  Q
    |||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||| ||||    
T  52029970 agtgtgctccttctcaaggtctcaggttcgattctcccccgatgccaatttgggtgggctaa 52029909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 13857888 - 13857843
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||||||||| || |||||||| |||||||||||||||| ||||    
T  13857888 tttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 13857843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 18928367 - 18928408
Alignment:
Q  127 gaccttgaagtgtgctcctttcaaggtctcaggttcgattct 168  Q
    |||||| |||||||||||| |||||||||||||||| |||||    
T  18928367 gaccttaaagtgtgctcctctcaaggtctcaggttcaattct 18928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 39714855 - 39714775
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    ||||||| |||||||| | |||| | ||| |||| |||| |||| ||||||||||| ||||||||||| ||| |||||||||    
T  39714855 aaacccacttgggttggcatagtggcgttggctt-gggatcttggagtgtgctcctctcaaggtctcaagtttgattctcct 39714775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 47360558 - 47360517
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 164  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  47360558 ttgggaccttggagtgtgctcctctcaagatctcaggttcga 47360517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 11063555 - 11063634
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 169  Q
    ||||||||||||||||| ||||| || || || |||||||||  ||||||| ||||  ||||||||| |||||||||||||    
T  11063555 aaacccatttgggttgatctagtggtattggc-ttgggacctgaaagtgtgttcctcctcaaggtcttaggttcgattctc 11063634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 27159221 - 27159257
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcg 271  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27159221 caagtggacggtgggattggtcccctcagattagtcg 27159257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 44417506 - 44417462
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||||||||| |||||||| || ||||||||||||||| |||||    
T  44417506 ttgggaccttggagtgtgctgctctcaaggtctcaggtttgattc 44417462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 18128541 - 18128696
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||||||||||||||||||||||||| || |||||||||| ||  ||||||||| ||||| | || | |||| | |||| |||| ||||||||    
T  18128541 ttgggatcttgaagtgtgctcctttcaaggtcttagattcgattctctctggtgccaatttcggtgggcgaa-tccataaagagctttgctctggcttta 18128639  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    || | |||||   ||||||| |||| ||||||| || ||||||||||||||| ||||    
T  18128640 aacggggcccccgcaagtgggcggtgggattggtcctctcagattagtcggttcttg 18128696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 4718673 - 4718821
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||||   |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  4718673 ttgggatcttggagtttgctccttcagaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 4718771  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||||||| |||| ||||||| |||||| |||||||||    
T  4718772 aacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcg 4718821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 28193529 - 28193650
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| |||||  ||||| |||||| |||| |||| |||||||||| | ||||| | ||||||| |||| |    
T  28193529 aggtctcaggttcgattccctctggtgccaatttcggtgggttaagtccatacagagct-tgctctggctttaaacggggcccctacaagtgggcggtgg 28193627  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  28193628 gattggtcccctcggattagtcg 28193650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 26169021 - 26168918
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt-ctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||| ||||||||||||||| |||| ||||| |||||||||| ||||| | ||||||||||| |||| || | ||||||||    
T  26169021 ttgggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggc-aagttcatacagagct-tgttctggcttta 26168924  T
Q  222 aatgag 227  Q
    ||||||    
T  26168923 aatgag 26168918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 40137007 - 40136942
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtgg 188  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||   ||||||||| |||||    
T  40137007 ttgggaccttggagtgtgctcctctcaaggtctcaggtttgattctcccggtgccaatttcggtgg 40136942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 9126549 - 9126481
Alignment:
Q  210 gctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||||||||||| |  || | ||||| |||||| |||||||| ||||||||||||||||||||||    
T  9126549 gctttggctttaaatgggaaccctgcaagtagacggtgggattggatccctcagattagtcggtccttg 9126481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 16852339 - 16852438
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcctta-tgccaatttgggtg 187  Q
    ||||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  || |||||||||||||||||||||||| ||||||||| ||||    
T  16852339 aaacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtg 16852437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 6530807 - 6530885
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||| |||||||| ||| || ||||| |||| ||||||| | ||||||||||| |||| |||||||||||||||||||    
T  6530807 aacccacttgggttggcctggtggtgttggctt-gggacctaggagtgtgctcctctcaatgtctcaggttcgattctcc 6530885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 24339782 - 24339696
Alignment:
Q  137 tgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 223  Q
    |||||| || ||||||||| |||||||||| || ||| | ||||||| |||||  ||||||||||||||||| |||||||||||||||    
T  24339782 tgtgcttctctcaaggtcttaggttcgattttctcttgtaccaatttcggtgga-taagttcatacaaagctttgctttggctttaaa 24339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 271
Target Start/End: Original strand, 2166753 - 2166872
Alignment:
Q  149 aaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    ||||||||||||||||||| |||  |||||||||  || | |||||| |||||| |||| |||| ||||||||||| || |||   ||||||| |||| |    
T  2166753 aaggtctcaggttcgattc-cctcgtgccaatttcagtaggctaagtccatacagagct-tgctctggctttaaataagaccccg-caagtgggcggtgg 2166849  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| ||||||||||||||||    
T  2166850 gattggtcccctcagattagtcg 2166872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 32879334 - 32879455
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| ||||||||||||| |||| |||| || | ||||| | |||||   ||||||| |||| |    
T  32879334 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagttcatacagagct-tgctctgacattaaacggggcccccacaagtgggcggtgg 32879432  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  32879433 gattggtcccctcggattagtcg 32879455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 34237801 - 34237680
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||  |||| |    
T  34237801 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgagcggtgg 34237703  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  34237702 gattggtcccctcggattagtcg 34237680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 39349311 - 39349432
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  39349311 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 39349409  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||  |||||| |||||||||    
T  39349410 gattgatcccctcggattagtcg 39349432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 3624582 - 3624658
Alignment:
Q  93 cccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctc 169  Q
    |||| |||||||| |||||| || || |||| ||||||| | ||||||||||| ||||||||||||||||||||||||    
T  3624582 cccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 3734796 - 3734648
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  3734796 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 3734698  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||| ||| | || ||||||| |||||| |||||||||    
T  3734697 aacggggcccccgcaaatgggcagtgggattggtcccctcggattagtcg 3734648  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 18897165 - 18897264
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattc-tccttatgccaatttgggtg 187  Q
    ||||||| |||||||| |||||| ||||| | |||||||||||  |||||||||||  ||||||||||| ||||||||| ||||  ||||||||| ||||    
T  18897165 aaacccacttgggttggcctagtggtgttgg-tttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattcttcctggtgccaatttaggtg 18897263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 279
Target Start/End: Complemental strand, 34639379 - 34639225
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaa 222  Q
    |||||| |||| ||||||||||| ||||||||||||| ||||| |  ||  ||||||||| |||||  ||||| |||||| |||| |||| ||||||  |    
T  34639379 ttgggatcttggagtgtgctcctctcaaggtctcaggctcgatccctctggtgccaatttcggtgg-gtaagtccatacagagctttgctctggcttaga 34639281  T
Q  223 atgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    | | ||||  | |||||||||||| ||||||| ||| ||  |||| |||||||||||    
T  34639280 acg-ggcctctgcaagtggacggtaggattggtcccttcgaattaatcggtccttga 34639225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 11979283 - 11979350
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattct-ccttatgccaatttgggtgg 188  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| |||| ||| |||||||||| |||||    
T  11979283 ttgggaccttgaagtgtgcttcttctcaaggtcttaggttcggttctgcctgatgccaatttaggtgg 11979350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 29855460 - 29855417
Alignment:
Q  126 ggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc 169  Q
    |||||||| ||||||||||| | |||||||||||||||||||||    
T  29855460 ggaccttgtagtgtgctcctcttaaggtctcaggttcgattctc 29855417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 27746509 - 27746408
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggcttt 220  Q
    ||||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||    
T  27746509 tttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttt 27746411  T
Q  221 aaa 223  Q
    |||    
T  27746410 aaa 27746408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 19703564 - 19703484
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||| |||||||| |||||| || || |||| |||||||   |||||||||||  ||||||||||||||||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggctt-gggacctgagagtgtgctcctcctcaaggtctcaggttcgattctcc 19703484  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 22779686 - 22779727
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcga 164  Q
    ||||||||||| | ||||||||| ||||||||||||||||||    
T  22779686 ttgggaccttggaatgtgctcctctcaaggtctcaggttcga 22779727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 33727949 - 33727873
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattc 167  Q
    ||||||||||||||| |||||| || | || |||| ||| | |||||||||||||  |||||||||||||||||||||    
T  33727949 aacccatttgggttgccctagtggtat-aggtttgagacttggaagtgtgctcctcctcaaggtctcaggttcgattc 33727873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 34694634 - 34694593
Alignment:
Q  237 agtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||||| ||||||| ||||||||||||||| |||||||    
T  34694634 agtggacggtgggattggtcccctcagattagtctgtccttg 34694593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 9126628 - 9126584
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||||||||| ||||||||||| |||||| |||| |||||||||    
T  9126628 ttgggaccttggagtgtgctcctctcaaggactcaagttcgattc 9126584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 22269010 - 22268935
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgatt 166  Q
    ||||||| |||||||| ||| || ||||| |||| ||||||||| ||||||||| | ||||||||||| ||| ||||    
T  22269010 aaacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcttctcaaggtctcaagtttgatt 22268935  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 26688865 - 26688936
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttc 162  Q
    |||||| |||||||| ||| || ||||| |||| ||||||||| |||||||||||  ||||||||||||||||    
T  26688865 aacccacttgggttggcctggtggtgttggctt-gggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 28566104 - 28566182
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 169  Q
    ||||||| ||||||||||||||| || || | |||||||||||  |||||||||||| |||||| |||| |||||||||||    
T  28566104 aaacccacttgggttgacctagtggtatt-ggtttgggaccttagagtgtgctccttctcaagg-ctcatgttcgattctc 28566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 28573727 - 28573805
Alignment:
Q  90 aaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 169  Q
    ||||||| ||||||||||||||| || || | |||||||||||  |||||||||||| |||||| |||| |||||||||||    
T  28573727 aaacccacttgggttgacctagtggtatt-ggtttgggaccttagagtgtgctccttctcaagg-ctcatgttcgattctc 28573805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 28787541 - 28787493
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    |||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  28787541 ttgggaccttcaagtgtgctcctcctcaaggtctcaggtttgattctcc 28787493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 271
Target Start/End: Complemental strand, 34610831 - 34610712
Alignment:
Q  152 gtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttgga 250  Q
    |||| ||||||||||| | || |||||||||| ||||||||||||  ||||| |||| |||| |||||||||| ||| |||   ||||||| |||| | |    
T  34610831 gtctgaggttcgattccctctgatgccaatttcggtggtctaagtctatacagagct-tgctctggctttaaacgagcccctcgcaagtgggcggtagaa 34610733  T
Q  251 ttggacccctcagattagtcg 271  Q
    |||| ||||||  ||||||||    
T  34610732 ttggtcccctcgaattagtcg 34610712  T

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Target: scaffold0623 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 1202 - 1072
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||   |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||||||| |    
T  1202 aggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtggacggtgg 1104  T
Q  249 gattggacccctcagattagtcggtccttgat 280  Q
    |||||| ||||||  |||||||| | ||||||    
T  1103 gattggtcccctcgaattagtcgattcttgat 1072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 9445 - 9315
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||   |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||||||| |    
T  9445 aggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtggacggtgg 9347  T
Q  249 gattggacccctcagattagtcggtccttgat 280  Q
    |||||| ||||||  |||||||| | ||||||    
T  9346 gattggtcccctcgaattagtcgattcttgat 9315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 12120 - 12027
Alignment:
Q  175 gccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtc 270  Q
    |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||||||| ||||||| ||||||  |||||||    
T  12120 gccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccca-caagtggacggtgggattggtcccctcgaattagtc 12027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 72670 - 72544
Alignment:
Q  155 tcaggttcgattctcctt-atgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcc--cattcaagtggacggttggat 251  Q
    ||||||||||||| |||| ||| |||||| ||||| |||||| |||||| || |||||| ||| |||||||  ||||  |   |||||| ||||| ||||    
T  72670 tcaggttcgattcccctttatgtcaattttggtgggctaagtccatacagagttatgctctggttttaaatagggcctccccacaagtgaacggtgggat 72571  T
Q  252 tggacccctcagattagtcggtccttg 278  Q
    |||||||||||||| ||||||||||||    
T  72570 tggacccctcagatgagtcggtccttg 72544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 25956368 - 25956290
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    ||||||||||||||| |||||| || || |||| ||||||||| ||||||||||| ||||||||| |||||| |||||||    
T  25956368 aacccatttgggttggcctagtggtattggctt-gggaccttggagtgtgctcctctcaaggtcttaggttcaattctcc 25956290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 278
Target Start/End: Complemental strand, 654851 - 654723
Alignment:
Q  149 aaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggtt 247  Q
    ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| ||||     
T  654851 aaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacg-ggcccccgcaagtgggcggtg 654754  T
Q  248 ggattggacccctcagattagtcggtccttg 278  Q
    ||||||| |||||| ||||||||||| ||||    
T  654753 ggattggtcccctcggattagtcggttcttg 654723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 22119943 - 22120064
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  22119943 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 22120041  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  22120042 gattggtcccctcggattagtcg 22120064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 40543056 - 40542935
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  40543056 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 40542958  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  40542957 gattggtcccctcggattagtcg 40542935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 2751299 - 2751447
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  2751299 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 2751397  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||| ||| |||| ||||||| |||||| |||||||||    
T  2751398 aacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcg 2751447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 43215182 - 43215277
Alignment:
Q  89 aaaacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc-cttatgccaatttg 183  Q
    |||||||| ||||||||  ||||| || || |||| ||||||| | |||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  43215182 aaaacccacttgggttggtctagtggtattggctt-gggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctcttatgccaatttg 43215277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 1469164 - 1469248
Alignment:
Q  147 tcaaggtctcaggttcgattctcctt--atgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggccc 231  Q
    |||||||||||||||||||| |||||  |||||||||| | ||| | |||| ||||||||||| | |||||||||||||||||||||    
T  1469164 tcaaggtctcaggttcgatt-tcctttaatgccaatttcgatgggc-aagtccatacaaagctttactttggctttaaatgaggccc 1469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 33869521 - 33869443
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 169  Q
    |||||| |||||||| ||||||||| || |||| | ||||| |||||||||||||| |||||||||| ||||||||||||    
T  33869521 aacccacttgggttggcctagtagtattggctt-gagacctggaagtgtgctccttctcaaggtctctggttcgattctc 33869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 7275332 - 7275453
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||||   |||||   ||||||| |||| |    
T  7275332 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacagggcccccgcaagtgggcggtgg 7275430  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  7275431 gattggtcccctcggattagtcg 7275453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 18044162 - 18044283
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    ||||| |||||||||||| | ||| ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   |||||||  ||| |    
T  18044162 aggtcccaggttcgattccctcttgtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccacaagtgggtggtgg 18044260  T
Q  249 gattggacccctcagattagtcg 271  Q
     ||||| ||||||||||||||||    
T  18044261 aattggtcccctcagattagtcg 18044283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 22703541 - 22703662
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  || |||||| ||||| |||||| ||||||||||| |||| |||||||||| | | |||   ||||||| |||| |    
T  22703541 aggtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacaaagct-tgctctggctttaaacgggacccccgcaagtgggcggtgg 22703639  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  22703640 gattggtcccctcggattagtcg 22703662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 11910103 - 11909971
Alignment:
Q  147 tcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacgg 245  Q
    |||||||||||||||| ||| || ||  || |||||| ||||||| |||| ||||| ||||| || | | |||||||| ||||||| | |||||||||||    
T  11910103 tcaaggtctcaggttcaattttctctggtgtcaattttggtggtc-aagtccatacgaagctttgttctagctttaaacgaggcccctacaagtggacgg 11910005  T
Q  246 ttggattggacccctcagattagtcggtccttga 279  Q
    | ||||||| || |||  |||||||| |||||||    
T  11910004 tgggattggtcctctcgaattagtcgatccttga 11909971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 36772448 - 36772376
Alignment:
Q  150 aggtctcaggttcgattctccttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaa 223  Q
    |||||||||||| ||||  || ||||||||||| ||||| ||||||||||||| |||| |||| ||||||||||    
T  36772448 aggtctcaggtttgatttcccctatgccaatttcggtgggctaagttcatacagagct-tgctctggctttaaa 36772376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 5579310 - 5579231
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc 170  Q
    |||||| |||||||||||| || ||||| |||| ||||||||| |||||||||||  ||||||||||||||| || |||||    
T  5579310 aacccacttgggttgacctggtggtgttggctt-gggaccttggagtgtgctcctcctcaaggtctcaggtttgactctcc 5579231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 23012629 - 23012534
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtc 270  Q
    ||||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   ||||||| |||| ||||||| ||||||  |||||||    
T  23012629 tgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccacaagtgggcggtgggattggtcccctcgtattagtc 23012534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 25132420 - 25132352
Alignment:
Q  126 ggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctccttatgccaatttgggtggtctaa 193  Q
    |||||| | |||||||||||| | ||||||||||||||||||||||  |||| ||||||||||| ||||    
T  25132420 ggacctaggagtgtgctccttcttaaggtctcaggttcgattctcccaatgctaatttgggtgggctaa 25132352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 10091243 - 10091373
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||   |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| || ||   ||||||| |||| |    
T  10091243 aggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggtccccgcaagtgggcggtgg 10091341  T
Q  249 gattggacccctcagattagtcggtccttgat 280  Q
    |||||  |||||| ||||||||| | ||||||    
T  10091342 gattgatcccctcggattagtcgattcttgat 10091373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 26459486 - 26459408
Alignment:
Q  91 aacccatttgggttgacctagtagtgttagctttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctc 169  Q
    |||||| |||||||| |||||| || || |||| ||||||| | |||||||||||  |||||||||||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggctt-gggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 27009414 - 27009536
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaa-gtggacggtt 247  Q
    |||||||||||||||| | | ||  ||||||||| ||||| |||||| |||||| |||| |||| || ||||||| | ||||| | ||| |||||||||     
T  27009414 aggtctcaggttcgatcccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctgactttaaacggggcccctgcaaagtggacggtg 27009512  T
Q  248 ggattggacccctcagattagtcg 271  Q
    ||||||| ||||||| ||||||||    
T  27009513 ggattggtcccctcaaattagtcg 27009536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 38373041 - 38372998
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  38373041 caagtggacggtgggattggaccccttggattagtcggtccttg 38372998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 2103110 - 2103230
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||   |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   ||||||| |||| |    
T  2103110 aggtctcaggttcgattccctctggagccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccccgcaagtgggcggtgg 2103208  T
Q  249 gattggacccctcagattagtcg 271  Q
    ||||||  ||||| |||||||||    
T  2103209 gattgg-tccctcggattagtcg 2103230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 23636657 - 23636583
Alignment:
Q  204 agctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||| |||| |||||||||||| |||||   ||||| |||||| |||||||||  ||| ||||||||||||||||    
T  23636657 agctttgctctggctttaaatggggccctcacaagtagacggtgggattggacttctcggattagtcggtccttg 23636583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 674496 - 674455
Alignment:
Q  236 aagtggacggttggattggacccctcagattagtcggtcctt 277  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  674496 aagtggacggtgggattgatcccctcagattagtcggtcctt 674455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 11997877 - 11998025
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| ||||||| |  |||||||||||||||||| | ||  ||||||||| ||| | |||||| |||||| |||| |||| ||||||||    
T  11997877 ttgggatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggttggctaagtccatacatagct-tgctctggcttta 11997975  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    ||   |||||   ||||||| |||| ||||||| ||||||  ||||||||    
T  11997976 aactgggcccccgcaagtgggcggtgggattggtcccctcgaattagtcg 11998025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 22696347 - 22696392
Alignment:
Q  122 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    ||||||| |||| ||||||||||| ||||||||||||||| |||||    
T  22696347 tttgggatcttggagtgtgctcctctcaaggtctcaggtttgattc 22696392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 1766205 - 1766161
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    ||||||| |||||||||||| |||||| ||||||||||| |||||    
T  1766205 caagtgggcggttggattggtcccctcggattagtcggtacttga 1766161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 2344379 - 2344482
Alignment:
Q  174 tgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggt 273  Q
    ||||||||| ||||| |||||| |||||| |||| |  |||||||||||| | | |||   ||||||  |||| ||||||| |||||| |||||||||||    
T  2344379 tgccaattttggtgggctaagtccatacagagctttt-tttggctttaaacgggacccccgcaagtgagcggtgggattggtcccctcggattagtcggt 2344477  T
Q  274 ccttg 278  Q
    |||||    
T  2344478 ccttg 2344482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 12211596 - 12211552
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttga 279  Q
    ||||||| |||| ||||||| |||||| |||||||||||||||||    
T  12211596 caagtgggcggtaggattgggcccctctgattagtcggtccttga 12211552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 21217979 - 21217860
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | || |||||||||| ||||| |||||| |||||| |||| |||| | |||||||| | | |||   ||||||| |||| |    
T  21217979 aggtctcaggttcgattccctctgatgccaatttcggtgggctaagtccatacagagct-tgctctagctttaaacgggccccccacaagtgggcggtgg 21217881  T
Q  249 gattggacccctcagattagt 269  Q
    |||||  |||||| |||||||    
T  21217880 gattgatcccctcggattagt 21217860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 22760894 - 22760942
Alignment:
Q  123 ttgggaccttgaagtgtgctcctt-tcaaggtctcaggttcgattctcc 170  Q
    ||||||||| | |||||||||||  ||||||||||||||||||||||||    
T  22760894 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 22760942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 28646997 - 28647041
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattc 167  Q
    |||||| |||| |||||||| || |||||||||||||||||||||    
T  28646997 ttgggatcttggagtgtgcttctctcaaggtctcaggttcgattc 28647041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 46279048 - 46279092
Alignment:
Q  126 ggaccttgaagtgtgctcctttcaaggtctcaggttcgattctcc 170  Q
    |||||||| ||||||||||| |||||||||| |||| ||||||||    
T  46279048 ggaccttggagtgtgctcctctcaaggtctccggtttgattctcc 46279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 161860 - 161981
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||| |||| |||||   ||||||| |||| |    
T  161860 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttttaatggggcccccgcaagtgggcggtgg 161958  T
Q  249 gattggacccctcagattagtcg 271  Q
    |||||| |||||| |||||||||    
T  161959 gattggtcccctcggattagtcg 161981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 5255 - 5107
Alignment:
Q  123 ttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggcttta 221  Q
    |||||| |||| ||| |||||||   ||||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| ||||||||    
T  5255 ttgggatcttggagtttgctcctccaaaggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 5157  T
Q  222 aatgaggcccattcaagtggacggttggattggacccctcagattagtcg 271  Q
    || | |||||   ||| ||| |||| ||||||| |||||| |||||||||    
T  5156 aacggggcccccgcaaatgggcggtgggattggtcccctcggattagtcg 5107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 32365 - 32469
Alignment:
Q  175 gccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtc 274  Q
    |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||  ||| ||||||| |||||| ||||||||| |     
T  32365 gccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatgtggcccccgcaagtgggtggtgggattggtcccctcggattagtcgatt 32463  T
Q  275 cttgat 280  Q
    ||||||    
T  32464 cttgat 32469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 17764 - 17720
Alignment:
Q  127 gaccttgaagtgtgctcctttcaaggtctcaggttcgattctcct 171  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||    
T  17764 gaccttggagtgttctcctctcaaggtctcaggttcgattctcct 17720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 10813 - 10720
Alignment:
Q  175 gccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtc 270  Q
    |||||||| ||||| |||||| |||||| |||| |||| |||||||||||| |||||   |||||||||||| ||||||| ||||||  |||||||    
T  10813 gccaatttcggtgggctaagtccatacagagct-tgctctggctttaaatggggcccca-caagtggacggtgggattggtcccctcgaattagtc 10720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 2955 - 2888
Alignment:
Q  122 tttgggaccttgaagtgtgctcct-ttcaaggtctcaggttcgattctcc-ttatgccaatttgggtg 187  Q
    ||||||||||||||||||| ||||  | ||||||||| ||||||||||||  ||||||||||||||||    
T  2955 tttgggaccttgaagtgtgatcctccttaaggtctcaagttcgattctccactatgccaatttgggtg 2888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 5967 - 6010
Alignment:
Q  235 caagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||||||||||| ||||||| | |||||||||||||||||||||    
T  5967 caagtggacggtgggattggtcacctcagattagtcggtccttg 6010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 40376 - 40496
Alignment:
Q  150 aggtctcaggttcgattctc-cttatgccaatttgggtggtctaagttcatacaaagctatgctttggctttaaatgaggcccattcaagtggacggttg 248  Q
    |||||||||||||||||| | ||  ||||||||| ||||| |||||| |||||| |||| |||| |||||||||| | |||||   ||||||| |||| |    
T  40376 aggtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggctttaaacggggcccccgcaagtgggcggtgg 40474  T
Q  249 gattggacccctcagattagtcg 271  Q
    ||||||  ||||| |||||||||    
T  40475 gattgg-tccctcggattagtcg 40496  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 66864 - 66933
Alignment:
Q  209 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttg 278  Q
    |||| |||||||||| | |||||   ||||||| |||| ||||||| |||||| ||||||||||||||||    
T  66864 tgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggtccttg 66933  T

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