View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_29 (Length: 292)
Name: NF18065_low_29
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 4625379 - 4625637
Alignment:
| Q |
15 |
cataggtcatctgattccgaggatgaaccggcgaagtgggaaaagttcaagagaagtcaaattgaaaccatcaataatcgacaaagaaccacctccaaat |
114 |
Q |
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| T |
4625379 |
cataggtcatctgattccgaggatgaatcggcgaagtgggaaaagttcaagagaagtcaaattgaaatcatcaataatcgacaaagaaccacctccaaat |
4625478 |
T |
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| Q |
115 |
ttgcttccatcgaagcacgaatttcccaaactcctcctcgtcctcaccgtcgcatcgttagttgcttggtcctccaatcttctcttcacctctttccttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625479 |
ttgcttccatcgaagcacgaatttcccaaactcctcctcgtcctcaccgtcgcatcgttagttgcttggtcctccaatcttctcttcacctctttccttc |
4625578 |
T |
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| Q |
215 |
atccatcaaccaaacccttttgcgacaccaattcccttcataatcactttcccggtcag |
273 |
Q |
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| T |
4625579 |
atccatcaaccaaacccttctgcgacaccaattcccttcataatcactttcccggtcag |
4625637 |
T |
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