View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18065_low_3 (Length: 691)

Name: NF18065_low_3
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18065_low_3
NF18065_low_3
[»] chr4 (12 HSPs)
chr4 (12-285)||(34140950-34141223)
chr4 (12-285)||(34137287-34137560)
chr4 (12-285)||(34133376-34133649)
chr4 (12-273)||(34127115-34127376)
chr4 (285-361)||(34140342-34140418)
chr4 (503-618)||(40333269-40333383)
chr4 (367-421)||(40333025-40333079)
chr4 (464-504)||(40333163-40333203)
chr4 (457-495)||(40333076-40333114)
chr4 (446-486)||(6020123-6020164)
chr4 (446-486)||(48583854-48583895)
chr4 (363-407)||(48583945-48583989)
[»] chr7 (3 HSPs)
chr7 (361-495)||(13066753-13066886)
chr7 (501-621)||(13066481-13066600)
chr7 (464-504)||(13066664-13066704)
[»] chr8 (2 HSPs)
chr8 (501-620)||(17074356-17074474)
chr8 (501-620)||(17573796-17573914)
[»] chr5 (1 HSPs)
chr5 (425-486)||(41312972-41313034)
[»] chr2 (1 HSPs)
chr2 (443-477)||(13557696-13557730)
[»] chr6 (1 HSPs)
chr6 (443-495)||(12868900-12868952)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 34141223 - 34140950
Alignment:
Q  12 cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141223 cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa 34141124  T
Q  112 gcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc 211  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34141123 gcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc 34141024  T
Q  212 tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34141023 tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 34140950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 34137560 - 34137287
Alignment:
Q  12 cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa 111  Q
    |||||||||||||||||  |||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34137560 cacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaa 34137461  T
Q  112 gcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc 211  Q
     |||||| ||||| |||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||| |||||| |||||||| |||||||||||    
T  34137460 acttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagc 34137361  T
Q  212 tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 285  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||    
T  34137360 tgctaaattgttctttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggtt 34137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 34133649 - 34133376
Alignment:
Q  12 cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa 111  Q
    |||||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||||  | ||| ||| ||||||||||||||||| ||||||||    
T  34133649 cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa 34133550  T
Q  112 gcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc 211  Q
     ||| || |||||||||||||||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  34133549 acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagc 34133450  T
Q  212 tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggtt 285  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  34133449 ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggtt 34133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 34127376 - 34127115
Alignment:
Q  12 cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa 111  Q
    |||||||||||||| ||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | ||| |||||||||||| |    
T  34127376 cacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata 34127277  T
Q  112 gcttagttaaggagattggaagtgcatgcaaagagtggggattctttaaagttacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc 211  Q
    |||| || ||| ||||||||||||||||||| || ||||| |||||| |||||||||||||||  |||||||||||| | ||||| || |||||||||||    
T  34127276 gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc 34127177  T
Q  212 tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatca 273  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||    
T  34127176 tgctagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatca 34127115  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 34140418 - 34140342
Alignment:
Q  285 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34140418 tttttataataatttgaacgattaattcatcaaacataattaagaatatatttgaattgttttaaccatataaatta 34140342  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 503 - 618
Target Start/End: Original strand, 40333269 - 40333383
Alignment:
Q  503 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgtcg 602  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||| |||||||| ||||||||||||||||||    
T  40333269 ggaggcaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgttgtgtaaatatgacgacaaattttgtcg 40333367  T
Q  603 tgtattttagcatttt 618  Q
    ||||||||||||||||    
T  40333368 tgtattttagcatttt 40333383  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 40333025 - 40333079
Alignment:
Q  367 ctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttg 421  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40333025 ctgctatacagcacgacaaagtcagcacacgagagccacacgaacatacaatttg 40333079  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 40333163 - 40333203
Alignment:
Q  464 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 504  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40333163 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 40333203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 495
Target Start/End: Original strand, 40333076 - 40333114
Alignment:
Q  457 tttgtttatagtatatattaaaaaacaatgctaccaaag 495  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40333076 tttgtttatagtatatattaaaaaacaatgttatcaaag 40333114  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 6020123 - 6020164
Alignment:
Q  446 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 486  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  6020123 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 6020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 48583895 - 48583854
Alignment:
Q  446 ttattgatgcttttgtttatagta-tatattaaaaaacaatg 486  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  48583895 ttattgatgcttttgtatatagtagtatattaaaaaacaatg 48583854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 48583989 - 48583945
Alignment:
Q  363 agcgctgctatacagcaagacaaagtcagcacacgagagccacac 407  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacac 48583945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 361 - 495
Target Start/End: Complemental strand, 13066886 - 13066753
Alignment:
Q  361 agagcgctgctatacagcaagacaaagtcagcacacgagagccacacgaacatacaatttgctgtattattagttttctttcagtttattgatgcttttg 460  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  13066886 agagcactgctatacagcatgacaaagtcagcacacgagagccacacgaacatacaatttgttgtattattag-tttctttcagtttattgatgcttttg 13066788  T
Q  461 tttatagtatatattaaaaaacaatgctaccaaag 495  Q
    |||||||||||||||||||||||||| || |||||    
T  13066787 tttatagtatatattaaaaaacaatgttatcaaag 13066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 501 - 621
Target Start/End: Complemental strand, 13066600 - 13066481
Alignment:
Q  501 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 600  Q
    ||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||  |  |||||||||||||||||| |||||||||||||    
T  13066600 gtggaggaaaaatttgtcatttgtgtcaaatcaaaattaggaaaaaaataggaagtggtaattacaa-acttgtcgtgtaaatctgtcgacaaattttgt 13066502  T
Q  601 cgtgtattttagcattttcct 621  Q
    |||||||||||||||||||||    
T  13066501 cgtgtattttagcattttcct 13066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 13066704 - 13066664
Alignment:
Q  464 atagtatatattaaaaaacaatgctaccaaaggaatggtgg 504  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  13066704 atagtatatattaaaaaacaatgctaccaaagaaatggtgg 13066664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 620
Target Start/End: Complemental strand, 17074474 - 17074356
Alignment:
Q  501 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 600  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17074474 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17074376  T
Q  601 cgtgtattttagcattttcc 620  Q
    ||||||||||| ||||||||    
T  17074375 cgtgtattttaacattttcc 17074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 620
Target Start/End: Original strand, 17573796 - 17573914
Alignment:
Q  501 gtggaggcaaaatttgtcatttgtgtcaaatcaaaattaggnnnnnnntaggaagtggtaattttagcacttgtcgtgtaaatctgacgacaaattttgt 600  Q
    ||||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||   |  ||||||||||||||| ||||||||| ||||||    
T  17573796 gtggaggcataatttgtcatttgtgtcaaatcaaaattaggaaaaaaatagtaagtggtaataacaa-acttgtcgtgtaaatttgacgacaatttttgt 17573894  T
Q  601 cgtgtattttagcattttcc 620  Q
    ||||||||||| ||||||||    
T  17573895 cgtgtattttaacattttcc 17573914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 41312972 - 41313034
Alignment:
Q  425 tattattagttttctttcagtttattgatgcttttgtttatagta-tatattaaaaaacaatg 486  Q
    ||||| ||| |||||||  | |||||||||||||||| ||||||| |||||||||||||||||    
T  41312972 tattaatagatttctttatggttattgatgcttttgtatatagtagtatattaaaaaacaatg 41313034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 477
Target Start/End: Complemental strand, 13557730 - 13557696
Alignment:
Q  443 agtttattgatgcttttgtttatagtatatattaa 477  Q
    ||||||||||||||||||| |||||||||||||||    
T  13557730 agtttattgatgcttttgtatatagtatatattaa 13557696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 12868952 - 12868900
Alignment:
Q  443 agtttattgatgcttttgtttatagtatatattaaaaaacaatgctaccaaag 495  Q
    ||||||| ||||||||||| || | ||||||||||||||| ||| ||||||||    
T  12868952 agtttatcgatgcttttgtataaaatatatattaaaaaaccatgttaccaaag 12868900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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