View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_31 (Length: 285)
Name: NF18065_low_31
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 45173528 - 45173783
Alignment:
| Q |
18 |
acataaaactgaaatatcccttcctcaggtttatatgtcccaagataacactttaaacacttttcgtgaaaggggaaaaataaaacaggataggtccaaa |
117 |
Q |
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| T |
45173528 |
acataaaactgaaatatcccttcctcaggtttatatgtcccaagataacactttaaacacttttcgtgaaaggggaaaaataaaacaggatagctccaaa |
45173627 |
T |
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| Q |
118 |
ctttttatcccttaacnnnnnnnnnctccatactttttaaggcatttccaatttgctagaaagcaaaatttagtgcatgtttgtatttactgcgagttta |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45173628 |
ctttttatcccttaacaaaaaaaaactccatactttttaaggcatttccaatttgctagaaagcaaaatttagtgcatgtttgtatttactgcgagttta |
45173727 |
T |
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| Q |
218 |
accaaattactgtgtgacaaatcaacaatgtagatttgacaaaaactatacacctt |
273 |
Q |
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| T |
45173728 |
acaaaattactgtgtgacaaatcaacaatgtagatttgacaaaaactatacacctt |
45173783 |
T |
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