View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_39 (Length: 241)
Name: NF18065_low_39
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_39 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41464816 - 41464576
Alignment:
| Q |
1 |
attgaattttagcaaaagaaaaactaacgtaacaacatacatattaatatttgtcatttaaaaagaatattgtatttacannnnnnnggttttatctttt |
100 |
Q |
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| T |
41464816 |
attgaattttagcaaaagggaaactaacgtaacaacatacatactaatatttgtcattaaaaaagaatattgtatttaattttttttggttttatctttt |
41464717 |
T |
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| Q |
101 |
attaatactacttgagatttataattctgtgaaaggaacctaaaaaatgaatacatagcatcgaggtctttatgtcgatattagttatagtcggtcaatg |
200 |
Q |
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| T |
41464716 |
attaatactacttgagatttataattctatgaaaggaacctaaaaaatgaatacatagcattgaggtctttatgtcgatattagttatagtcagtcaatg |
41464617 |
T |
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| Q |
201 |
gataatagtctaagtcaatatgaaattagaaaaatactcat |
241 |
Q |
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| T |
41464616 |
gataatagtctaagtcaatatgaaattagaaaaatactcat |
41464576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 41460068 - 41459968
Alignment:
| Q |
88 |
ggttttatcttttattaatactacttgagatttataattctgtgaaaggaacctaaaaaatgaatacatagcatcgaggtctttatgtcgatattagtta |
187 |
Q |
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| T |
41460068 |
ggttttatcttttatcaatactacttgagatttataattctatgaaaggaacctaaaaaatgaatacatagcattgaggtctttatgtcgatattagtta |
41459969 |
T |
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| Q |
188 |
t |
188 |
Q |
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| T |
41459968 |
t |
41459968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 41459946 - 41459884
Alignment:
| Q |
176 |
cgatattagttatagtcggtcaatggataatagtctaagtcaatatgaaattagaaaaatact |
238 |
Q |
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| T |
41459946 |
cgatattagttatagtcagtcaatggattatagtctaagtcaatatgaaattagaaaaatact |
41459884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 37519587 - 37519634
Alignment:
| Q |
17 |
agaaaaactaacgtaacaacatacatattaatatttgtcatttaaaaa |
64 |
Q |
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| T |
37519587 |
agaaaaactaacataacaattaacatattaatatttgtcatttaaaaa |
37519634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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