View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_4 (Length: 622)
Name: NF18065_low_4
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 335 - 622
Target Start/End: Original strand, 32682847 - 32683134
Alignment:
| Q |
335 |
agtcataagtcataacatgcaaagttacaaattagggatatctagtcaaccaatatatgatgaaaagttcaaaactgatgattaacttaaaagtcaactg |
434 |
Q |
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| T |
32682847 |
agtcataagtcataacatgcaaagttacaaattagggatatctagtcaaccaatatatgatgaaaagttcaaaactgatgattaacttaaaagtcaactg |
32682946 |
T |
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| Q |
435 |
tacatctcctctcaaaccaggacgcatctatgccaaatagcatactcacaaaagattagttatacgttttattcttataattatttcaaaaataatcaaa |
534 |
Q |
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| T |
32682947 |
tacatctcctctcaaaccaggacgcatctatgccaaatagcatactcacaaaagattagttatacgttttattcttataattatttcaaaaataatcaaa |
32683046 |
T |
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| Q |
535 |
aaattaattctacattttaattctacttttgttagtattcccaagacttgtgaccacggttttgtgaccatgaaaacttcctctcaca |
622 |
Q |
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| T |
32683047 |
aaattaattctacattttaattctacttttgttagtattcccaagacttgtgaccacggttttgtgaccatgaaaacttcctctcaca |
32683134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 32682580 - 32682854
Alignment:
| Q |
30 |
atacaatcatagaacttcaaataatgaaaaccccttgaacaaattatcaatttagactttt-gattaaagatgggagccagcaatgacctaactgcccca |
128 |
Q |
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| T |
32682580 |
atacaatcatagaacttcaaataatgaaaaccccttgaacaaattatcaatttagactttttgattaaagatgggagccagcaatgacctaactgcccca |
32682679 |
T |
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| Q |
129 |
tctttatacacttccattctatatcttgggggaagggacaacttggatgaatttaccaaaatgaatggccttgtcgggaatatggaaggagtagaacaat |
228 |
Q |
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| T |
32682680 |
tctttatacacttccattctatatcttgggggaagggacaacttggatgaatttaccaaaatgaatggccttgtcgggaatatggaaggagtagaataat |
32682779 |
T |
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| Q |
229 |
tcagagcttaccatttcttcattgggagggcccaccattcacaaatcaaagtattcattggtaatgtagtcataa |
303 |
Q |
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| T |
32682780 |
tcagagcttaccatttcttcattgggagggggcaccattcacaaatcaaagtattcattggtaatgtagtcataa |
32682854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 473 - 552
Target Start/End: Original strand, 21894505 - 21894585
Alignment:
| Q |
473 |
agcatactcacaaaagattagttatacgttttattcttataattatttcaaaaataatc-aaaaaattaattctacatttt |
552 |
Q |
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| T |
21894505 |
agcatactcacaaactattaagtatacattttattcttttaattatttcaaaaataatcaaaaaaattaattctacatttt |
21894585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 45419040 - 45419115
Alignment:
| Q |
478 |
actcacaaaagattagttatacgttttattcttataattatttcaaaaataat-caaaaaattaattctacatttt |
552 |
Q |
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| T |
45419040 |
actcacaaaatattaattctactttttattcttttaattatttcaaaaataataaaaaaaattaattttacatttt |
45419115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 37781086 - 37781027
Alignment:
| Q |
484 |
aaaagattagttatacgttttattcttataattatttcaaaaataatcaaaaaattaattc |
544 |
Q |
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| T |
37781086 |
aaaatattagttatacattttattcttttaattattttaaaaatagt-aaaaaattaattc |
37781027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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