View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_5 (Length: 619)
Name: NF18065_low_5
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 32683270 - 32683878
Alignment:
| Q |
1 |
tttttcttccatcaaccttcttcccagtcgacatcatcttcattgtcttctgctggagcatcggcttcaacattcaaatccaccttgtaacccccatttc |
100 |
Q |
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| T |
32683270 |
tttttcttccatcaaccttcttcccagtcgacatcatcttcattgtcttctgctggagcatcggcttcaacattcaaatccaccttgtaacctccatttc |
32683369 |
T |
|
| Q |
101 |
ctttaaaagttacaccaagatcagaaatgaggggacacaaataacattatcaaccaaagggtaaaataatagagtattaagaattgaacgcactattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32683370 |
ctttaaaagttacaccaagatcagaaatgaggggacacaaataacattatcaaccaaagggtaaaataatagagtattgagaattgaacgcactattttt |
32683469 |
T |
|
| Q |
201 |
caacattgacacttttacacagtcaattctgaaaaataaaagatgttcagatcaataataaacaagctcctactcaatgacctcattgtcaacatcttaa |
300 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683470 |
caacgttaacacttttacacagtcaattctgaaaaataaaagatgttcagatcaataataaacaagctcctactcaatgacctcattgtcaacatcttaa |
32683569 |
T |
|
| Q |
301 |
cgcatgattctcctggaaccagattcgtgaggctagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccc |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683570 |
cgcacgattctcctggaaccagattcgtgaggctagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccc |
32683669 |
T |
|
| Q |
401 |
tccgatttttgaaattaaaacgatccctctatacgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttcn |
500 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683670 |
tctgatttttgaaattaaaacgatccctctatacgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttca |
32683769 |
T |
|
| Q |
501 |
nnnnnngtgttaaaaataattcatattttagttgaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactca |
600 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683770 |
aaaaaagtgttaaaaataattcatactttagttgaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactca |
32683869 |
T |
|
| Q |
601 |
caggttctg |
609 |
Q |
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|||| |||| |
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| T |
32683870 |
cagggtctg |
32683878 |
T |
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