View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_6 (Length: 527)
Name: NF18065_low_6
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 154 - 527
Target Start/End: Complemental strand, 10983075 - 10982703
Alignment:
| Q |
154 |
cataaagaaatagtatcgctgagcacttttaaaataatttgtgtagaaaaggataattgtgcaaatatttatgaattaaaccacctatttattacaaaaa |
253 |
Q |
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| T |
10983075 |
cataaagaaatagtatcgctgagcacttttaaaataatttgtatggaaaaggataattgtgcaaatatttatgaattaaaccacctatttattacaaaaa |
10982976 |
T |
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| Q |
254 |
caaataaattaaaggagcccaatttatccgaatcacaatttcaacaccattttattcataaattttattttatgagacaacaaaacaacttatgataagg |
353 |
Q |
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| T |
10982975 |
caaataaattaaaggagcccaatttatccgaatcacaatttcaccaccattttattcataaattttattttatgagacaacaaaacaacttatgataagg |
10982876 |
T |
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| Q |
354 |
gccaacaaaacccatatcatataaaaaagttatattatgttacttctaattctgcttccacaacttagccaacttattcaaagcgacaagggaacttcca |
453 |
Q |
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| T |
10982875 |
gccaacaaaacccatatcatata-aaaagttatattatgttacttctaattctgcttccacaactgagccaacttattcaaagcgacaagggaacttcca |
10982777 |
T |
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| Q |
454 |
ccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcgga |
527 |
Q |
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| T |
10982776 |
ccttcttctcttgcctctttagcacttattttcatcttgaaaataatttgtctaatctctttccccttatcgga |
10982703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 527
Target Start/End: Complemental strand, 10968877 - 10968753
Alignment:
| Q |
403 |
ttctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataattt |
502 |
Q |
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| T |
10968877 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10968778 |
T |
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| Q |
503 |
gtctaatctctttccctttatcgga |
527 |
Q |
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| T |
10968777 |
tcctaatctctttccctttatcgga |
10968753 |
T |
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