View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_7 (Length: 518)
Name: NF18065_low_7
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 11544217 - 11544710
Alignment:
| Q |
1 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacacattatgtgtatagagatcttgttggcg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11544217 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtatagagatcttgttggga |
11544316 |
T |
|
| Q |
101 |
actataatttatatggagctgaaagctggattaaggagcttcaaagaacgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544317 |
actataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaac |
11544416 |
T |
|
| Q |
201 |
tataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagctaaaataattaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11544417 |
tataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttatctaaaataattaa |
11544516 |
T |
|
| Q |
301 |
tattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544517 |
tattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtt |
11544616 |
T |
|
| Q |
401 |
taacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgcagcaccatggacgatgatac |
494 |
Q |
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| T |
11544617 |
taacaatgcctggtcaattggaattgaaccatttaactcttgctagcattggtggtattagagtctcttttcgcagcaccacggacgatgatac |
11544710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 11557638 - 11558106
Alignment:
| Q |
1 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacacattatgtgtatagagatcttgttggcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
11557638 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaagtggaagataagatccatacacattacgtgtatagagatcttgttggtg |
11557737 |
T |
|
| Q |
101 |
actataatttatatggagctgaaagctggattaaggagcttcaaagaacgtgtgagagatctttaggctcttatgttgaagcaatacctgttgaagaaac |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11557738 |
aatataatttatatggagctgaaagctggattaaggagcttcaaagaatgtgcgagagatctttaggctctaatgttgaagcaatacctgttgaagaaac |
11557837 |
T |
|
| Q |
201 |
tataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagctaaaataattaa |
300 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
11557838 |
tataggaggttaatc-----ttgtcttctaaatttacccttccaaatatctctattcatctattttccttgtaaattttatatttagcgaatttaattaa |
11557932 |
T |
|
| Q |
301 |
tattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtt |
400 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| | | |
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| T |
11557933 |
tattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtgaagatgttttgtgaatgct |
11558032 |
T |
|
| Q |
401 |
taacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgc |
474 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
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| T |
11558033 |
taacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagtctctattcgc |
11558106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22823143 - 22823070
Alignment:
| Q |
1 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacaca |
74 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22823143 |
aagatattattacatgttttatggtaggtcacttgggttgaacatgtggaagtggaagataagatccatacaca |
22823070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22831949 - 22831876
Alignment:
| Q |
1 |
aagatattattacatgttttatgttaggtcacttgggttgaacatgtggaaatggaagataagatccatacaca |
74 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
22831949 |
aagatattaatacatgttttatgttaggtcactcgggttgaacatgtggaagtggaagataagatccatacaca |
22831876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 326 - 474
Target Start/End: Complemental strand, 12064468 - 12064319
Alignment:
| Q |
326 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaatt |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||| || |||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
|
| Q |
426 |
gaaccatttaactcttgctagcattggtggtg-ttagagtctcttttcgc |
474 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||| ||||| |
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|
| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgc |
12064319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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