View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18065_low_8 (Length: 492)
Name: NF18065_low_8
Description: NF18065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18065_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Original strand, 49296749 - 49297216
Alignment:
| Q |
9 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296749 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49296848 |
T |
|
| Q |
109 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296849 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49296948 |
T |
|
| Q |
209 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296949 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
49297048 |
T |
|
| Q |
309 |
tttaatctcac---caggctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatctta |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49297049 |
tttaatctcaccagcaggctcacacaaatctacttaataataataagttgaccttttttggttatata-tatatagagaggcaatgttgagttaatctta |
49297147 |
T |
|
| Q |
406 |
gagattatggcactaggtataattaattagtctaacttaattgatagatttggggtgccacttaaggac |
474 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297148 |
gagattatggcactaggtataattaattagtctaacttaattgatagatttggggtgccacttaaggac |
49297216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Original strand, 49289798 - 49290265
Alignment:
| Q |
9 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289798 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49289897 |
T |
|
| Q |
109 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289898 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49289997 |
T |
|
| Q |
209 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49289998 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
49290097 |
T |
|
| Q |
309 |
tttaatctcac---caggctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatctta |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
49290098 |
tttaatctcaccagcaggctcacacaaatctacttaataataataagttgaccttttttggttatata-tatagagagaggcaatgttgagttaatctta |
49290196 |
T |
|
| Q |
406 |
gagattatggcactaggtataattaattagtctaacttaattgatagatttggggtgccacttaaggac |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49290197 |
gagattatggcactaggtataattaattagtctaacttaattgatagatttggggtgccacttaaggac |
49290265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 49303479 - 49303788
Alignment:
| Q |
9 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303479 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49303578 |
T |
|
| Q |
109 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303579 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49303678 |
T |
|
| Q |
209 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303679 |
ttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggc |
49303778 |
T |
|
| Q |
309 |
tttaatctca |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
49303779 |
tttaatctca |
49303788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 6568113 - 6567878
Alignment:
| Q |
26 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
125 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| ||| |
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|
| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
|
| Q |
126 |
aacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagct |
225 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| ||||||||||||||||| |
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|
| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagct |
6567917 |
T |
|
| Q |
226 |
tgttggtggagccaatcaagttatgagtcttcatcttaa |
264 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
6567916 |
tgttggtggagctaatgaagttatgagccttcaccttaa |
6567878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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