View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18066_high_2 (Length: 291)
Name: NF18066_high_2
Description: NF18066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18066_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 42860553 - 42860361
Alignment:
| Q |
1 |
agtgatcctaatcaataactttgacagaatggccttgaatgttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42860553 |
agtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtca |
42860454 |
T |
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| Q |
101 |
agcaagtcgtaaataccactgtaaaatacgttgaatcaaagtctaaatcaaaatttaaactgattaaatggttaaacaaacaaatagcaactt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42860453 |
agcaagtcgtaaataccactgtaaaatacgttgaatcaaagtctaaatcaaaatttaaactgattaaatggttaaacaaacaaatagcaactt |
42860361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 42856486 - 42856347
Alignment:
| Q |
1 |
agtgatcctaatcaataactttgacagaatggccttgaatgttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42856486 |
agtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtca |
42856387 |
T |
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| Q |
101 |
agcaagtcgtaaataccactgtaaaatacgttgaatcaaa |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42856386 |
agcaagtcgtaaataccactgtaaaatacgttgaatcaaa |
42856347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42848289 - 42848198
Alignment:
| Q |
1 |
agtgatcctaatcaataactttgacagaatggccttgaatgttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaa |
92 |
Q |
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|||||||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42848289 |
agtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcctcaa |
42848198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 42852946 - 42852842
Alignment:
| Q |
5 |
atcctaatcaataactttgacagaatggccttgaatgttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgttaagca |
104 |
Q |
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|||| ||||||||||||||| |||||||| | | |||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||| || ||||| |
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| T |
42852946 |
atccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgtgtctcaatgtcgtcaagca |
42852847 |
T |
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| Q |
105 |
agtcg |
109 |
Q |
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||||| |
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| T |
42852846 |
agtcg |
42852842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42854845 - 42854725
Alignment:
| Q |
1 |
agtgatcctaatcaataactttgacagaatggccttgaatgttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaatgttgtta |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| | |||| ||||||||||||| ||||||||| ||||| ||||| | ||||||||||| | |
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| T |
42854845 |
agtgatcctaatcaataactttgatagaatggcctcacaagttctaagttaagcaatatctatatagcggaagatgcagaaacggacctcaatgttgtca |
42854746 |
T |
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| Q |
101 |
agcaagtcgtaaataccactg |
121 |
Q |
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|||||||| ||||||||||| |
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| T |
42854745 |
agcaagtcacaaataccactg |
42854725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 42852707 - 42852655
Alignment:
| Q |
207 |
caaatagtaactcacatcctatctcgtacaactgcgcgtgccctaagaaattc |
259 |
Q |
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|||||||||||| ||||||||||||| | || || |||||| ||||||||||| |
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| T |
42852707 |
caaatagtaacttacatcctatctcggataagtgtgcgtgctctaagaaattc |
42852655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 21765253 - 21765093
Alignment:
| Q |
111 |
aaataccactgtaaaatacgttgaatcaaagtctaaatcaaaatttaaactgattaaatggttaaacaaacaaatagcaacttccctaaaataaaccaaa |
210 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21765253 |
aaataccattgtaaaatatgttgaatcaaagtctaaatcaaaattaaaactaattaaatagttaaacaaacaaatagcaacttccctaaaataaaccaaa |
21765154 |
T |
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| Q |
211 |
tagtaactcacatcctatctcgtacaactgcgcgtgccctaagaaattcttgagggtccat |
271 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21765153 |
tagtaacttacatcccatctcgtacaactgcgcgtgccctaagaaattcttgagggtccat |
21765093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 21765296 - 21765260
Alignment:
| Q |
121 |
gtaaaatacgttgaatcaaagtctaaatcaaaattta |
157 |
Q |
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|||||||||| |||||||||||| ||||||||||||| |
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| T |
21765296 |
gtaaaatacgctgaatcaaagtcaaaatcaaaattta |
21765260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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