View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18067_low_5 (Length: 248)
Name: NF18067_low_5
Description: NF18067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18067_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 50014667 - 50014424
Alignment:
| Q |
1 |
ttcgtaacacaataagtgttgaaattgtaccaagagatagtaaagaaaatataaactaacctcctgttcagtctcacatagtgaacatatcacctgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50014667 |
ttcgtaacacaataagtgttgaaattgtaccaagagatagtaaagaaaatataaactaacctcctgttcagtctcacatagtgaacatatcacctgaaaa |
50014568 |
T |
|
| Q |
101 |
gttaagagcacttattaccattgcctcatcagaaaaataacaacagcaaaagcgatcacaaaattgcagatcttcaatgaggtgttaaaatagacgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50014567 |
gttaagagcacttattaccattgcctcatcagaaaaataacaacagcaaaagcgatcacaaaattgcagatcttcaatgaggtgttaaaatagacgaaca |
50014468 |
T |
|
| Q |
201 |
tacttgtttgacttgatggcggggaatgtcgtgcctatgcttct |
244 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
50014467 |
tacttgtttgacttgatggcggggaatgtcgtgtctatgcttct |
50014424 |
T |
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