View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18067_low_8 (Length: 235)
Name: NF18067_low_8
Description: NF18067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18067_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2125216 - 2125349
Alignment:
| Q |
1 |
ctacgaagcattctagcattataataaatatatctgaacaaatataactacaaccttaccattaaaagcgatcaaaatttgttaatgaaataacattaca |
100 |
Q |
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| T |
2125216 |
ctacgaagcattctagcattataataaatatatctgaacaaatataactaaaaccttaccattaaaagcgatcaaaatttgttaatgaaataacattaca |
2125315 |
T |
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| Q |
101 |
aaaagcaaccacctccctcgttcacggaggaactcttt |
138 |
Q |
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| T |
2125316 |
aaaagcaacca----cctcgttcacggaggaactcttt |
2125349 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 2125563 - 2125631
Alignment:
| Q |
136 |
tttcaatgaatggaactgaaataaattaagtaacttggaggaaattaaatatgcaaacagaaaaaggaacatcgatag |
213 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
2125563 |
tttcaatgaatggaactgaaataaattaa----cttggaggaaat-----atgcaaacagaaaaaggaacatcgatag |
2125631 |
T |
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