View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_105 (Length: 213)

Name: NF18068_high_105
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_105
NF18068_high_105
[»] chr2 (1 HSPs)
chr2 (18-197)||(36286486-36286665)
[»] chr4 (2 HSPs)
chr4 (116-196)||(19262870-19262950)
chr4 (122-169)||(50875155-50875202)
[»] chr6 (2 HSPs)
chr6 (111-170)||(22745474-22745533)
chr6 (115-152)||(5931799-5931836)
[»] chr1 (1 HSPs)
chr1 (124-170)||(43609760-43609806)
[»] scaffold0057 (2 HSPs)
scaffold0057 (120-157)||(30119-30156)
scaffold0057 (119-157)||(50720-50758)
[»] chr8 (2 HSPs)
chr8 (126-170)||(5481971-5482015)
chr8 (124-164)||(27219851-27219891)
[»] chr3 (1 HSPs)
chr3 (119-165)||(14782804-14782850)
[»] chr7 (1 HSPs)
chr7 (115-164)||(31020633-31020682)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 36286665 - 36286486
Alignment:
Q  18 aaacccaagtcagcaattgctgaaagcacaccaacaataacagggccatcagatcaaacccctaaacccaacgtatctttaaagaagctcaaactttata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  36286665 aaacccaagtcagcaattgctgaaagcacaccaacaataacagggccatcagatcaaacccctaaacccaacgtgtctttaaagaagctcaaactctata 36286566  T
Q  118 acaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtcaacactcacatacgtgattacattcat 197  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  36286565 acaccgacacttctgatcgaaagtgtgtctggtgttcaacatgtgtcggtgtcaacactcacatatgtgattacattcat 36286486  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 19262870 - 19262950
Alignment:
Q  116 taacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtcaacactcacatacgtgattacattca 196  Q
    |||||||||||||||| || ||| |||||||  |||||| ||||||||||||||||||| | ||| | |||||||||||||    
T  19262870 taacaccgacacttctaataaaaggtgtgtccagtgtccgacatgtgtcggtgtcaacattgacacatgtgattacattca 19262950  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 50875155 - 50875202
Alignment:
Q  122 cgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgt 169  Q
    ||||||||||||||||| | |||| |||||||| ||||||||||||||    
T  50875155 cgacacttctgatcaaaggcgtgtttggtgtccgacatgtgtcggtgt 50875202  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 22745474 - 22745533
Alignment:
Q  111 ctttataacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 170  Q
    |||| |||||||||||| |||||||||| ||||||||||||||| |||||  ||||||||    
T  22745474 ctttgtaacaccgacacctctgatcaaaggtgtgtctggtgtccgacatggatcggtgtc 22745533  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 5931799 - 5931836
Alignment:
Q  115 ataacaccgacacttctgatcaaaagtgtgtctggtgt 152  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5931799 ataacaccgacacttctgattaaaagtttgtctggtgt 5931836  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 43609760 - 43609806
Alignment:
Q  124 acacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 170  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||    
T  43609760 acacttctgatcaaaagcgtgtccagtgtccaacatgtgtcggtgtc 43609806  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 30156 - 30119
Alignment:
Q  120 accgacacttctgatcaaaagtgtgtctggtgtccaac 157  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30156 accgacacttctgatcaaaggtgtgtctggtgtccaac 30119  T

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Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 50758 - 50720
Alignment:
Q  119 caccgacacttctgatcaaaagtgtgtctggtgtccaac 157  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  50758 caccgacacttctgatcaaaggtgtgtccggtgtccaac 50720  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 5482015 - 5481971
Alignment:
Q  126 acttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 170  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||    
T  5482015 acttctgatcaaacgcgtgtctggtgtccaacatgtatcggtgtc 5481971  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
Q  124 acacttctgatcaaaagtgtgtctggtgtccaacatgtgtc 164  Q
    |||||||||||| || |||||||||||||| ||||||||||    
T  27219891 acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc 27219851  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 14782804 - 14782850
Alignment:
Q  119 caccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcg 165  Q
    ||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  14782804 caccgacacttctgatggaaagcgtgtctggtgtccaacacgtgtcg 14782850  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 31020633 - 31020682
Alignment:
Q  115 ataacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtc 164  Q
    ||||||||||||||||||||  || ||||||| ||||||||||| |||||    
T  31020633 ataacaccgacacttctgatggaaggtgtgtccggtgtccaacacgtgtc 31020682  T

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