View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_108 (Length: 210)
Name: NF18068_high_108
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_108 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 31048115 - 31047938
Alignment:
| Q |
17 |
agaaacttgaaagagtggtgtgagataaagagaatcagcatcgaaatttccatgagttctagcataatactttcatttttattggctcaataagcccaat |
116 |
Q |
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| T |
31048115 |
agaaacttgaaagagtggtgtgagataaagagaatcagcatcgaaatttccatgagttctagcataatactttcatttttgttggctcaataagcccaat |
31048016 |
T |
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| Q |
117 |
ttcattgttgaattccaagagaatccaaagtttccttagttatcccattgcagggcacaccatccttttccttgatga |
194 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31048015 |
ttcattgttgaattccaagagaatccaaagttcccttagttatcccattgtagggcacaccatccttttccttgatga |
31047938 |
T |
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