View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_109 (Length: 207)
Name: NF18068_high_109
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_109 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: scaffold0215 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 22470 - 22608
Alignment:
| Q |
50 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
149 |
Q |
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| T |
22470 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
22569 |
T |
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| Q |
150 |
ttcctttgaaaatctccaaccatctttcacggttcccag |
188 |
Q |
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| T |
22570 |
ttccttcgaaaatctccaaccatctttcacggttcccag |
22608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 18851938 - 18851800
Alignment:
| Q |
50 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
149 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851938 |
aataaagtaattcaatctcaaaacgaaaaaccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
18851839 |
T |
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| Q |
150 |
ttcctttgaaaatctccaaccatctttcacggttcccag |
188 |
Q |
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| T |
18851838 |
ttcttttgaaaatctccaaccatctttcacggttcccag |
18851800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 16352679 - 16352789
Alignment:
| Q |
78 |
aaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttcctttgaaaatctccaaccatctttc |
177 |
Q |
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|||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16352679 |
aaccatctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttc |
16352778 |
T |
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| Q |
178 |
acggttcccag |
188 |
Q |
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| T |
16352779 |
acggttcccag |
16352789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 18852011 - 18851974
Alignment:
| Q |
18 |
atgaaacaaaatttttcccttccaattcaaataataac |
55 |
Q |
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| T |
18852011 |
atgaaacaaaattttccccttccagttcaaataataac |
18851974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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