View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_11 (Length: 589)
Name: NF18068_high_11
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 466
Target Start/End: Original strand, 9208114 - 9208571
Alignment:
| Q |
15 |
caaaggagtggaagaatacaagttttgtttttgtgtggatcaaatagcctaatggctagaaatccaattttaaggtgaacaagtggtatggtcaggattc |
114 |
Q |
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| T |
9208114 |
caaagtagtggaagaatacaagttttgtttttgtgtggatcaaatagcttaatggctagaaattcagttttaatatgaacaagtggtatggtcagggttc |
9208213 |
T |
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| Q |
115 |
gaacctcgacctctacatatattatgcaacgtccctagcaaccgtgctaagttcgccgggacaatacaagatattttattcttacctaataaaaatttac |
214 |
Q |
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| T |
9208214 |
gaaccccgac-tctacatatattatgcaacgtccctagcaaccgtgctaagttcacggggacaatacaagatattttattcttacctaataaaaatttac |
9208312 |
T |
|
| Q |
215 |
ttatcaaaaatttgatattgtgctaccaaagtaaattttagaaacaatattatgtgaaacacgaattaaaattttatgatagtaa---nnnnnnnnnatt |
311 |
Q |
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| T |
9208313 |
ttatctaaaatttgatattgtgctaccaaagtaaattttataaacaatattatgtgaaacacgaattaaaattttatgatagtaattttttttttttatt |
9208412 |
T |
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| Q |
312 |
ttgtaaaactcaaatttcatttttattgaaatatatttttatctcnnnnnnnncaaaa-tcgaatttgaattttacaaaataaaaagttaactctttaag |
410 |
Q |
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| T |
9208413 |
tcgtaaaactcaaatttcatttttattgaaatatatttttatctaaaaaaaaaaaaaattcgaatttgagttttacaaaataaaaagttaactctttaag |
9208512 |
T |
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| Q |
411 |
atttgaagttaacctttactcttgtttgcttcattcaaca---tgtcattttgacaaat |
466 |
Q |
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| T |
9208513 |
atttgaagttaacctttactcttgtttgcttcattcaacatcttgtcattttgacaaat |
9208571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 466 - 571
Target Start/End: Original strand, 9211709 - 9211814
Alignment:
| Q |
466 |
tatacacaaataccgttataatactttgcacactagttgttcttgattgatccaaggaccataatcctctttgaattaggtcagaacacactagtcctaa |
565 |
Q |
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| T |
9211709 |
tatacacaaataccgttagaatactttccacactagttgttcttgattgatccaaggaccataatcctcttcgaattaggtcagaacacactagtcctaa |
9211808 |
T |
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| Q |
566 |
catatt |
571 |
Q |
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|||||| |
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| T |
9211809 |
catatt |
9211814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 23405334 - 23405204
Alignment:
| Q |
37 |
ttttgtttttgtgtggatcaaatagcctaatggctagaaatccaa--ttttaaggtgaacaagtggtatggtcaggattcgaacctcgacctctacatat |
134 |
Q |
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| T |
23405334 |
ttttttttttttttggatcaaatatcctaatggctagaaattcacctttttaaggtgaataagtggggtgtccagggttcgaaccccgacccctgcatat |
23405235 |
T |
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| Q |
135 |
attatgcaacgtccctagcaaccgtgctaag |
165 |
Q |
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| T |
23405234 |
attatgcaatgtccctaccaactgagctaag |
23405204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23919483 - 23919539
Alignment:
| Q |
109 |
ggattcgaacctcgacctctacatatattatgcaacgtccctagcaaccgtgctaag |
165 |
Q |
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| T |
23919483 |
ggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaag |
23919539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 19356249 - 19356205
Alignment:
| Q |
54 |
tcaaatagcctaatggctagaaatccaattttaaggtgaacaagt |
98 |
Q |
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| T |
19356249 |
tcaaatagcctagtggctagaaatcactttttaaggtgaacaagt |
19356205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 31184015 - 31183983
Alignment:
| Q |
110 |
gattcgaacctcgacctctacatatattatgca |
142 |
Q |
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| T |
31184015 |
gattcgaacatcgacctctacatatattatgca |
31183983 |
T |
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