View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_12 (Length: 586)
Name: NF18068_high_12
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 39 - 566
Target Start/End: Original strand, 239109 - 239638
Alignment:
| Q |
39 |
gagttcaaacacagcactaatgctaattccacacatcaagcggcccaaatttcttaccttgatattgttcatgcatgctcctttttgtttaaatggtagt |
138 |
Q |
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| T |
239109 |
gagttcaaacacagcactaatgctaattccacacatcaagcggcccaaatttcttaccttgatattgttcatgcatgcttctttttgtttaaatggtagt |
239208 |
T |
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| Q |
139 |
taaagtcatgtgctacttccctttcttatatatataaacttttttctcaaaattacacttgtgtagttgtgttttctcatggccttacccttaaccacaa |
238 |
Q |
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| T |
239209 |
taaagtcaggtgctacttccctttcttatatatataaacttttttctcaaaattacacttgtgtagttgtgttttctcatggccttacccttagccacaa |
239308 |
T |
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| Q |
239 |
atcggaatctagactgcgactttgaattaaaacgttcttaatgcttaagtttctattctttcattccacactttgatcattgctgcttcaaattaatcca |
338 |
Q |
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| T |
239309 |
atcggaatctagactgcgactttgaattaaaacgttcttaatgcttaagtttctattctttcattccacactttgatcattgctgcttcaaattaatcca |
239408 |
T |
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| Q |
339 |
atccaagtgtagatgggaaaatatatgagagcactttctgtatgttttctcttatgctctttggtcatgatatatcttgcacgatattaa-nnnnnnnnn |
437 |
Q |
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| T |
239409 |
atccaagtatcgatgggaaaatatatgagagcactttctgtatgttttctcttatgctctttggtcatgatatatcttgcacgatattaatttttttttt |
239508 |
T |
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| Q |
438 |
nnnnggaaagacacgatattaatgtt-gttggatttgtagtagatgtttgaatgttgtcatgctataatcttaccctttttctgatatgtgtcttatctt |
536 |
Q |
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| T |
239509 |
cttcggaaagacacgatgttaatgttggttggatttgtagtagatgtttgaatgttttcatgctataatcttaccctttttctgatatgtgtcttatctt |
239608 |
T |
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| Q |
537 |
atgcatgttgttggattagatggcaagggt |
566 |
Q |
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| T |
239609 |
atgcatgttgttggattagatggcaagggt |
239638 |
T |
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