View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_13 (Length: 582)

Name: NF18068_high_13
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_13
NF18068_high_13
[»] chr6 (2 HSPs)
chr6 (15-567)||(6474258-6474810)
chr6 (388-567)||(6463458-6463630)
[»] chr7 (3 HSPs)
chr7 (102-160)||(8982795-8982853)
chr7 (48-92)||(40110762-40110806)
chr7 (48-92)||(43955604-43955648)
[»] chr1 (2 HSPs)
chr1 (48-92)||(47165216-47165260)
chr1 (48-92)||(15034684-15034728)
[»] chr3 (2 HSPs)
chr3 (48-95)||(31189397-31189444)
chr3 (43-92)||(5415803-5415852)
[»] chr5 (6 HSPs)
chr5 (43-88)||(8255047-8255092)
chr5 (43-92)||(37722895-37722944)
chr5 (48-92)||(3563302-3563346)
chr5 (48-92)||(22766977-22767021)
chr5 (48-92)||(26281270-26281314)
chr5 (42-78)||(28828451-28828487)
[»] chr4 (2 HSPs)
chr4 (47-92)||(41139497-41139542)
chr4 (48-92)||(1539666-1539710)
[»] scaffold0048 (1 HSPs)
scaffold0048 (48-92)||(82968-83012)
[»] chr8 (2 HSPs)
chr8 (42-78)||(13404846-13404882)
chr8 (48-92)||(17110959-17111003)
[»] chr2 (1 HSPs)
chr2 (48-80)||(44256209-44256241)


Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 567
Target Start/End: Original strand, 6474258 - 6474810
Alignment:
Q  15 caaaggttaaaagaaaaagactttttcaaatactttgaggtaatgtaat----gctttgagggaattcgaatactttaaggtaaagtataatgcataatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||   ||||||||||||    
T  6474258 caaaggttaaaagaaaaagactttttcaaatactttgaggtaatgtaattaatgttttgagggaattcgaatactttaaggtaaa---taatgcataatg 6474354  T
Q  111 atttttcgagctttcactttccaaatttctatcttagaaggcactctaaattaaacagcattactttaaagttccttaatgtacttagctccaacaactt 210  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474355 atttttctagctttcactttccaaatttctatcttacaaggcactctaaattaaacagcattactttaaagttccttaatgtacttagctccaacaactt 6474454  T
Q  211 ctaatttaata---taagcaagttctaagaagattagtgtatgaaaacagcttaatcagattgtctactttaatctcatgatcttatgcttgttcctttt 307  Q
    |||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6474455 ctaatttaataatataagtaagttctaagaagattagtgtatgaaaacagcttaatcagattgtctactttgatctcatgatcttatgcttgttcctttt 6474554  T
Q  308 gatactgtctattattagtaaataaaggtctagtcatctaccaaaccaaaaatacaagggctgtaacattttaccactgcttttctagcattttaggagc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474555 gatactgtctattattagtaaataaaggtctagtcatctaccaaaccaaaaatacaagggctgtaacattttaccactgcttttctagcattttaggagc 6474654  T
Q  408 aaatataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaaatatatatataatcgttcaaaatttgtga 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  6474655 aaatataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaa----atatataatcgttcaaaatttgtga 6474750  T
Q  508 cccttcaacatatgctactaacaacaatcaaacattcatgacctataaactagttaaggg 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474751 cccttcaacatatgctactaacaacaatcaaacattcatgacctataaactagttaaggg 6474810  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 388 - 567
Target Start/End: Complemental strand, 6463630 - 6463458
Alignment:
Q  388 ttttctagcattttaggagcaaatataataattatctttcttaggaactacatttgaattttaatgaaacaaataaacagaactatagaaaatatatata 487  Q
    ||||||||||||| |||||||| |||||| ||||| |||| | ||||  |||||| ||||||||||||||||||||||| ||||||||||||||          
T  6463630 ttttctagcattt-aggagcaagtataattattatatttccttggaatcacattttaattttaatgaaacaaataaacaaaactatagaaaata------ 6463538  T
Q  488 taatcgttcaaaatttgtgacccttcaacatat--gctactaacaacaatcaaacattcatgacctataaactagttaaggg 567  Q
      ||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  6463537 --atcattcaaaatttgtgacccttcaacataaaagctactaacaacaatcaaacattcatgacctataaactagttaaggg 6463458  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 8982853 - 8982795
Alignment:
Q  102 tgcataatgatttttcgagctttcactttccaaatttctatcttagaaggcactctaaa 160  Q
    ||||||||||||||||   |||||||||||||||||||||||||| || ||||| ||||    
T  8982853 tgcataatgatttttctctctttcactttccaaatttctatcttacaaagcactataaa 8982795  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 40110762 - 40110806
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  40110762 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 40110806  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 43955648 - 43955604
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  43955648 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 43955604  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 47165260 - 47165216
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  47165260 tttgaggaaatgtaatgttttgagggaattcaaatactttaaggt 47165216  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 15034684 - 15034728
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  15034684 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 15034728  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 31189444 - 31189397
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggtaaa 95  Q
    ||||||||||||||||| |||||| |||||| |||||||| |||||||    
T  31189444 tttgaggtaatgtaatgttttgagagaattcaaatactttgaggtaaa 31189397  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 5415803 - 5415852
Alignment:
Q  43 aatactttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    |||| ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  5415803 aatattttgagggaatgtaatgttttgagggaattcaactactttaaggt 5415852  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 8255047 - 8255092
Alignment:
Q  43 aatactttgaggtaatgtaatgctttgagggaattcgaatacttta 88  Q
    |||||||| ||||||||||||| ||||||||||||| |||| ||||    
T  8255047 aatactttaaggtaatgtaatgttttgagggaattcaaatatttta 8255092  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 37722944 - 37722895
Alignment:
Q  43 aatactttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||| ||||    
T  37722944 aatattttgagggaatgtaatgttttgagggaattcaaatactttgaggt 37722895  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 3563302 - 3563346
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  3563302 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 3563346  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 22766977 - 22767021
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||||    
T  22766977 tttgagggaatataatgttttgagggaattcaaatactttaaggt 22767021  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 26281314 - 26281270
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  26281314 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 26281270  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 28828487 - 28828451
Alignment:
Q  42 aaatactttgaggtaatgtaatgctttgagggaattc 78  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  28828487 aaatattttgaggtaatgtaatgttttgagggaattc 28828451  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 41139497 - 41139542
Alignment:
Q  47 ctttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    |||||||||||||||||| ||||||| ||||| |||||||| ||||    
T  41139497 ctttgaggtaatgtaatgttttgaggaaattcaaatacttttaggt 41139542  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 1539666 - 1539710
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| |||||||| ||||    
T  1539666 tttgagggaatgtaatgttttgagggaattcaaatactttgaggt 1539710  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 82968 - 83012
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  82968 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 83012  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 13404846 - 13404882
Alignment:
Q  42 aaatactttgaggtaatgtaatgctttgagggaattc 78  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  13404846 aaatattttgaggtaatgtaatgttttgagggaattc 13404882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 17111003 - 17110959
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcgaatactttaaggt 92  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||    
T  17111003 tttgagggaatgtaatgttttgagggaattcaactactttaaggt 17110959  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 44256241 - 44256209
Alignment:
Q  48 tttgaggtaatgtaatgctttgagggaattcga 80  Q
    ||||||||||||||||| |||||||||||||||    
T  44256241 tttgaggtaatgtaatgttttgagggaattcga 44256209  T

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