View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_14 (Length: 581)
Name: NF18068_high_14
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 6872052 - 6872418
Alignment:
| Q |
19 |
gctctgacatccatgtagctgcaacattttttcctcgaagtgttatggcacatgggaggaatcgtgacccaaaaatatttctattcaattatattttagc |
118 |
Q |
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| T |
6872052 |
gctctgacatccatgtagctgcaacattttttcctcgaagtgttatggcacatgggaggaatcgtgacccaaaaatatttctattcaattatattttagc |
6872151 |
T |
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| Q |
119 |
ttcaaattttttaacaaggacgttatagtggttatggggaatattgaaaaagtcttcatttaattaaataagtttatagnnnnnnnnnnnnnnnnctgag |
218 |
Q |
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| T |
6872152 |
ttcaaattttttaacaaggacgttatagtggttatggggaatattgaaaaagtcttcatttaattaaataagttaatagaaaaaataaataaaaactgag |
6872251 |
T |
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| Q |
219 |
ggattattcttttcaatgactatgactgcgttatgaaaacgagaattgtacagctctttacaatttgtctataataattaaatgaagtctttacacccac |
318 |
Q |
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| T |
6872252 |
ggattattcttttcaatgactatgactgcgttatgaaaacgagaattgtacagctctttacaatttgtct---ataattaaatgaagtctttacacccac |
6872348 |
T |
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| Q |
319 |
ttatgaaataagcgatatttaattttgtttttcaaaaatgagtgaatgactatgatttgagggcttacat |
388 |
Q |
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| T |
6872349 |
ttatgaaataagcgatatttaattttgtttttcaaaagtgagtgaatgactatgatttgagggcttacat |
6872418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 446 - 566
Target Start/End: Original strand, 6872472 - 6872592
Alignment:
| Q |
446 |
atgcagtaaactaagctatgtcaaaatcacattgattagtaaatgcatatttgtagaagatagagaggccgggaaagatggtgtaaacggatgagcttat |
545 |
Q |
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| T |
6872472 |
atgcagtaaactaagctatgtcaaaatcacattgattagtaaatgcatatttgtagaagatagagaggccgggaaagatggtgtaaacggatgagcttat |
6872571 |
T |
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| Q |
546 |
aattcatatactggcatgtgc |
566 |
Q |
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| T |
6872572 |
aattcatatactggcatgtgc |
6872592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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