View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_16 (Length: 570)

Name: NF18068_high_16
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_16
NF18068_high_16
[»] chr5 (2 HSPs)
chr5 (236-552)||(1961652-1961948)
chr5 (15-225)||(1961998-1962208)
[»] chr3 (2 HSPs)
chr3 (159-212)||(54258683-54258736)
chr3 (237-269)||(20502191-20502223)
[»] scaffold0072 (1 HSPs)
scaffold0072 (237-267)||(4897-4927)
[»] chr2 (2 HSPs)
chr2 (171-225)||(41170693-41170747)
chr2 (171-212)||(4661356-4661397)
[»] chr1 (1 HSPs)
chr1 (159-225)||(32515362-32515428)
[»] chr7 (1 HSPs)
chr7 (216-245)||(28844477-28844506)
[»] chr8 (1 HSPs)
chr8 (237-269)||(40280320-40280352)
[»] chr6 (1 HSPs)
chr6 (171-207)||(31672462-31672498)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 236 - 552
Target Start/End: Complemental strand, 1961948 - 1961652
Alignment:
Q  236 aaaatagcttatatataggcacttatatgataagagcacaagttgtaatctattaattaagctgttaattcaaacattaagcttattgcactaaggtcta 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                    ||||||||||||||||||||    
T  1961948 aaaatagcttatatataggcacttatatgataagagcacaagttgtaatcgattaattaa--------------------gcttattgcactaaggtcta 1961869  T
Q  336 gctaaagtttatactgtaattgtatacattattagtttaatttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgt 435  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1961868 gctaaagtttatactgtaattgtatacattattagtttagtttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgt 1961769  T
Q  436 ttgtgtgagtgcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttg 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1961768 ttgtgtgagtgcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttg 1961669  T

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Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 1962208 - 1961998
Alignment:
Q  15 agcataggctaataggaattgctgagaatgcaaggagaatgggagcaagacatgttatgattatggcagcagatgttgtcaaggaagatgattgtagaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962208 agcataggctaataggaattgctgagaatgcaaggagaatgggagcaagacatgttatgattatggcagcagatgttgtcaaggaagatgattgtagaag 1962109  T
Q  115 atttgttaatgaaaccataaatgtctttggtcgtggtatgtttctttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962108 atttgttaatgaaaccataaatgtctttggtcgtggtatgtttctttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcg 1962009  T
Q  215 gaatagcttat 225  Q
    |||||||||||    
T  1962008 gaatagcttat 1961998  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 54258736 - 54258683
Alignment:
Q  159 tttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgtt 212  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||||| ||||    
T  54258736 tttggatcaacttattttagtttatttactcatataaacacttgtgagattgtt 54258683  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 20502191 - 20502223
Alignment:
Q  237 aaatagcttatatataggcacttatatgataag 269  Q
    |||||||||||||||| ||||||||||||||||    
T  20502191 aaatagcttatatataagcacttatatgataag 20502223  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 4927 - 4897
Alignment:
Q  237 aaatagcttatatataggcacttatatgata 267  Q
    |||||||||||||||||||||||||||||||    
T  4927 aaatagcttatatataggcacttatatgata 4897  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 41170747 - 41170693
Alignment:
Q  171 tatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 225  Q
    |||||||||||||||||| | |||||||||||||||| | || |||||| |||||    
T  41170747 tatttgagtttatctactaacataaacacttgtgagactatttggaataacttat 41170693  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 4661397 - 4661356
Alignment:
Q  171 tatttgagtttatctactcatataaacacttgtgagaatgtt 212  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  4661397 tatttgagtttatctactcatataaactcttgtaagattgtt 4661356  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 32515362 - 32515428
Alignment:
Q  159 tttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 225  Q
    ||||||| | |||||||||||||||||||| | |||| ||||||||||| |||| || | |||||||    
T  32515362 tttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 28844506 - 28844477
Alignment:
Q  216 aatagcttatagcttatatgaaaatagctt 245  Q
    ||||||||||||||||||||||||||||||    
T  28844506 aatagcttatagcttatatgaaaatagctt 28844477  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 40280320 - 40280352
Alignment:
Q  237 aaatagcttatatataggcacttatatgataag 269  Q
    ||||| |||||||||||||||||||||||||||    
T  40280320 aaataacttatatataggcacttatatgataag 40280352  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 31672462 - 31672498
Alignment:
Q  171 tatttgagtttatctactcatataaacacttgtgaga 207  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  31672462 tatttgagtttatctactcacataaacactagtgaga 31672498  T

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