View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_20 (Length: 480)
Name: NF18068_high_20
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 40 - 461
Target Start/End: Original strand, 50463149 - 50463573
Alignment:
| Q |
40 |
cttcaatctcagtaatctcactctgtccctcacatagatacaaaggtgaagaagaggcaaaagaagaaacagcagaa---tataaagttaaattagaaca |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50463149 |
cttcaatctcagtaatctcactctgtccctcacatagatacaaaggtgaagaagaggcaaaagaagaaacagcagaagaatataaagttaaattagaaca |
50463248 |
T |
|
| Q |
137 |
agagttattagaattattagaagctgctaaactaatcaataaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaatac |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463249 |
agagttattagaattattagaagctgctaaactaatcaacaaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaatac |
50463348 |
T |
|
| Q |
237 |
caactcaaaagctcttccaaaccatcccaatctttcacaccatgagactcaaccatctcttccattgatctcttaaaatcttcatatggatcctctgact |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463349 |
caactcaaaagctcttccaaaccatcccaatctttcacaccatgagactcaacaatctcttccattgatctcttaaaatcttcatatggatcctctgact |
50463448 |
T |
|
| Q |
337 |
ccatagctaacacaacactttctttgaatggaaaaccattcgccttcgccttttctaagatcgaactcgtgtcttctgcttcgaaaaacaatctctccga |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50463449 |
ccatagctaacacaacactttctttgaatggaaaaccattagccttcgccttttctaagatcgaactcgtgtcttctgcttcgaaaaacaatctctccga |
50463548 |
T |
|
| Q |
437 |
cttaactcctcgtaccaatgtctcc |
461 |
Q |
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| T |
50463549 |
cttaactcctcgtaccaatgtctcc |
50463573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
174 |
aataaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagct |
249 |
Q |
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|||||||||| ||||||| ||| |||||| |||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 42929638 - 42929540
Alignment:
| Q |
173 |
caataaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
271 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||| |
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| T |
42929638 |
caataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
42929540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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