View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_high_22 (Length: 478)
Name: NF18068_high_22
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_22 |
 | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0328 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 3015 - 2764
Alignment:
| Q |
18 |
aaatgaaaataacgcacaagaataaacttcaccaaaaacatcagaggcatactacaacagaatttggaaatacccaacctcacataaaagcttcaaacac |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3015 |
aaataaaaataacgcacaagaataaacttcagcaaaaacaccagaggcatactacaatagaatttggaaatacccagcctcacataaaagcttcaaacac |
2916 |
T |
|
| Q |
118 |
acagggagaaataaactccacaaaaatatcatacccagagagaaataaactcacataaataaaacttcacagaaagaaataaactctcacaaatcataac |
217 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||| || | |||||||||||||||||| ||||||||| |
|
|
| T |
2915 |
acaaggagaaataaactctacaaaaatatcatacccagggagaaataaaatcccataaataaaactccatataaagaaataaactctcactaatcataac |
2816 |
T |
|
| Q |
218 |
atacctagagagaaataaactctcacatgataacaacccagagagaaataaa |
269 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2815 |
atgtctagagagaaataaactctcacatgataacaatccagagagaaataaa |
2764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 20073105 - 20072979
Alignment:
| Q |
41 |
aaacttcaccaaaaacatcagaggcatactacaacagaatttggaaatacccaacctcacataaaagcttcaaacacacagggagaaataaactccacaa |
140 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| | ||| ||||||||| ||| ||||| | |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
20073105 |
aaacatcaccaaaaacatcagaggcttactacagcggaaattggaaatatccagcctcaaagaaaa-cttcaaacacatagggagaaataaactccacaa |
20073007 |
T |
|
| Q |
141 |
aaatatcatacccagagagaaataaact |
168 |
Q |
| |
|
||||| ||||| || |||||||||||| |
|
|
| T |
20073006 |
aaataacatactcaatgagaaataaact |
20072979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 6628271 - 6628212
Alignment:
| Q |
153 |
cagagagaaataaactcacataaataaaacttca-cagaaagaaataaactctcacaaat |
211 |
Q |
| |
|
||||||||||||||||| || || |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6628271 |
cagagagaaataaactctcacaagtaaaacttcatcagaaagaaataaactctcaaaaat |
6628212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 19705939 - 19705890
Alignment:
| Q |
224 |
agagagaaataaactctcacatgataacaacccagagagaaataaactccca |
275 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| |||||||||||||||| |
|
|
| T |
19705939 |
agagagaaataaactctcaca--acagcaacccagggagaaataaactccca |
19705890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 19005019 - 19004970
Alignment:
| Q |
224 |
agagagaaataaactctcacatgataacaacccagagagaaataaactccca |
275 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||| |||||||||||||||| |
|
|
| T |
19005019 |
agagagaaataaactctcaca--atatcaatccagggagaaataaactccca |
19004970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University