View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_27 (Length: 421)
Name: NF18068_high_27
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 37160743 - 37161129
Alignment:
| Q |
22 |
ccgatgaccctacatcctcggatcttagccagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggat |
121 |
Q |
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| T |
37160743 |
ccgatgaccctacatcctcggatcttagccagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggat |
37160842 |
T |
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| Q |
122 |
ctgctagtacgtctattcccacccatgctgcaaaccccggtactcctgcaattaattaagtgtatacttagatttacaatgaatttggaaaaatcacaat |
221 |
Q |
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| T |
37160843 |
ctgctagtacctctattcccacccatgctgcaaaccccggtactcctgcaattaattaagtgtatacttagatttacaatgaatttggaaaaatcacaat |
37160942 |
T |
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| Q |
222 |
tacctaaggaatgaaaagtagacatgtatagaaaaaactgacctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagt |
321 |
Q |
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| T |
37160943 |
tacctaaggaatgaaaagtagacatgtatagaaaaaactgacctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagt |
37161042 |
T |
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| Q |
322 |
tatttgagaagaaggtacaatactatattcagcaacaggagcatttggattcaaaagaatatccccctcactgtatttactatcctt |
408 |
Q |
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| T |
37161043 |
tatttgagaagaaggtacaatactatattcagcaacaggagcatttggattcaaaagaatatccccctcactgtatttactatcctt |
37161129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 37153570 - 37153722
Alignment:
| Q |
22 |
ccgatgaccctacatcctcggatcttagccagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggat |
121 |
Q |
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| T |
37153570 |
ccgatgacccgacatcctcggatcttagcaagctggccagcactcatacctacagcaccagatgcagcagatatgaatacatgtgatcctggttttggat |
37153669 |
T |
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| Q |
122 |
ctgctagtacgtctattcccacccatgctgcaaaccccggtactcctgcaatt |
174 |
Q |
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|| ||| ||| |||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
37153670 |
ctcctattacctctattcccaaccatgctgcaaaccccgctactcctgcaatt |
37153722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 37149612 - 37149762
Alignment:
| Q |
25 |
atgaccctacatcctcggatcttagccagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggatctg |
124 |
Q |
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| T |
37149612 |
atgacccgacatcctcgtatcttagcaagttgaccagcaatcataccaacagcaccagatgcagcagatatgaacacatttgatgctggctttgggtttc |
37149711 |
T |
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| Q |
125 |
ctagtacgtctattcccacccatgctgcaaaccccggtactcctgcaatta |
175 |
Q |
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| T |
37149712 |
ctagtacctctattcccaaccatgctgcaaacccaggtactcctgcaatta |
37149762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 262 - 408
Target Start/End: Original strand, 37150103 - 37150249
Alignment:
| Q |
262 |
acctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagttatttgagaagaaggtacaatactatattcagcaacagga |
361 |
Q |
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|||||||||||||||||||||||||| ||||||||||| | || ||||||||||||| |||| |||||||| |||||||| ||||| |||||||| || |
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| T |
37150103 |
acctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaagagggtacaatgctatactcagcaacgaga |
37150202 |
T |
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| Q |
362 |
gcatttggattcaaaagaatatccccctcactgtatttactatcctt |
408 |
Q |
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||| | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
37150203 |
ccatatccattcaaaaggatatccccctcactgtatttactatcctt |
37150249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 410
Target Start/End: Original strand, 37155249 - 37155397
Alignment:
| Q |
262 |
acctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagttatttgagaagaaggtacaatactatattcagcaacagga |
361 |
Q |
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|||||||| |||||||||||| |||| ||||||||||| | || ||||||||| || |||| | |||||| |||||||||||||| |||||||| | |
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| T |
37155249 |
acctaaagtaccaagataatctgacagtgaaatcccattagcaggatcaattttcctcattatgtcagaagagggtacaatactatactcagcaacgtaa |
37155348 |
T |
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| Q |
362 |
gcatttggattcaaaagaatatccccctcactgtatttactatcctttg |
410 |
Q |
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|||| ||||||||| ||||| || ||| |||||||||||||||||| |
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| T |
37155349 |
ccattcccattcaaaaggatatctccttcagtgtatttactatcctttg |
37155397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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