View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_30 (Length: 419)
Name: NF18068_high_30
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 4 - 409
Target Start/End: Complemental strand, 44085991 - 44085586
Alignment:
| Q |
4 |
gtccaagaatataacaaggtttcaagattttttgctggaactcaagaaaaatgtgttggttgcaagaaaacagtgtacccaattgaaaaggtatgttaaa |
103 |
Q |
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| T |
44085991 |
gtccaagcatataacaaggtttcaagattttttgctggaactcaagaaaaatgtgttggttgcaagaaaacagtgtacccaattgaaaaggtatattata |
44085892 |
T |
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| Q |
104 |
taacttaactttattctttagtaaactttactgattgggaaatgtccctttaaaagtaattttgcctctaaaatgagtaaggttgaatctatccttaaat |
203 |
Q |
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| T |
44085891 |
taacttaactatattctttagtaaactttactgattgggaaatgtccctttaaaagtaattttgcctctaaaatgagtaaggttgaatctatccttaaat |
44085792 |
T |
|
| Q |
204 |
gttaacatcatggtacactttaaatgatattaatggtgaatatattcttatttctcaccttaaagaacctcttatccttgacatctttattgttaaatta |
303 |
Q |
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| T |
44085791 |
gttaacatcatggtacactttaaatgatattaatggtgaatatattcttatttctcactttaaagaacctcttatccttgacatctttattgttaaatta |
44085692 |
T |
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| Q |
304 |
aatccatcttttttgtttctgacatactatttagattaagattaaaccacaactgagagaatctctcttatccatgtattctttacttaatattttagac |
403 |
Q |
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| T |
44085691 |
aatccatcttttttgtttctgacatactatttagattaagattaaaccacaactgagagaatctctcttatccatgtattctttacttaatattttagac |
44085592 |
T |
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| Q |
404 |
ctttat |
409 |
Q |
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|||||| |
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| T |
44085591 |
ctttat |
44085586 |
T |
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