View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_33 (Length: 417)
Name: NF18068_high_33
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 39994091 - 39994507
Alignment:
| Q |
1 |
aacagatatagagagtgatagaaccggcaccggatacggtatctatatcaggcagaaaggcatcagacggcaggttgttaacagcgtgatggaaatcgcg |
100 |
Q |
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| T |
39994091 |
aacagatatagagagtgatagaaccggcaccggatacggtatctatatcaggcagaaaggcatctgacggcaggttgttaacagcgtgatggaaatcgcg |
39994190 |
T |
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| Q |
101 |
taggttgaaatttcccacgggacggtacgcaatcatcaactacataacaagcagaatcactctcaatcactcactcttacagatcaagatataaacacgt |
200 |
Q |
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| T |
39994191 |
taggttgaaatttcccacgggacggtacgcaatcatcaactacataacaagcagaatcacgctcaatcactcactcttacggatcaaaatataaacacgt |
39994290 |
T |
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| Q |
201 |
ctcgtgcatttcgaatttatcaatctaatcacaacttgtnnnnnnnnttctcagaactgacacattacctcatcggaagaagataaacgattcttcacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39994291 |
ctcgtgcatttcgaatttatcaatctaatcacgaattgtaaaaaaaattctcagaactgaaacattacctcatcggaagaagataaacgattcttcacaa |
39994390 |
T |
|
| Q |
301 |
cgtaaaacaaaccaatcttatcactcagagtatcagatttgcgcgaagacaaagacgaattcgaaatggcgtagaaattagcgagttgaagtagcgactg |
400 |
Q |
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||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39994391 |
cgtaacacaaaccgatcttatcactgagagtatcagatttgcgcgaagacaaagacgaattcgaaatggcgtagaaattagcgagttgaagtagcgactg |
39994490 |
T |
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| Q |
401 |
aaatgaaaacacgaaga |
417 |
Q |
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| T |
39994491 |
aattgaaaacacgaaga |
39994507 |
T |
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