View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_34 (Length: 416)
Name: NF18068_high_34
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 48374799 - 48375190
Alignment:
| Q |
6 |
agcagcacagattaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
105 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374799 |
agcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
48374898 |
T |
|
| Q |
106 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374899 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
48374998 |
T |
|
| Q |
206 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374999 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaa |
48375098 |
T |
|
| Q |
306 |
agaaactgtgaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtga |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48375099 |
agaaactgtgaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtga |
48375190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 26 - 397
Target Start/End: Complemental strand, 53430997 - 53430626
Alignment:
| Q |
26 |
tgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaaccaggtctcgt |
125 |
Q |
| |
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|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| ||| |||||||| || ||||||||| || |
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| T |
53430997 |
tgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgt |
53430898 |
T |
|
| Q |
126 |
ttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttc |
225 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
53430897 |
ttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttc |
53430798 |
T |
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| Q |
226 |
aactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtgaatgtgagta |
325 |
Q |
| |
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|||||||| ||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| || || ||||||||| |||| |
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| T |
53430797 |
aactgccctaaggattcgactcgtgatcatatttccaatattaattacccttccatagcaatctccaacttcactgggataggaagtgtgaatgtaagta |
53430698 |
T |
|
| Q |
326 |
gaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtga |
397 |
Q |
| |
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|||||||||||||||| || |||||||||||| || |||||| ||||| ||| ||||||||||||| |||| |
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|
| T |
53430697 |
gaactgttacaaacgtcggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggggtga |
53430626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 53423045 - 53422663
Alignment:
| Q |
16 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
115 |
Q |
| |
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||||| |||||||||| ||||||||| || |||||||||| | ||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |
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| T |
53423045 |
attaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaatatctgaatcattccaac |
53422946 |
T |
|
| Q |
116 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaacc-actattaaggttatttcaaaaactgtcc |
214 |
Q |
| |
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|||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||| ||| |||||||| |||| |
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| T |
53422945 |
cagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtcc |
53422846 |
T |
|
| Q |
215 |
ctgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgt |
314 |
Q |
| |
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||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| || || ||| |
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|
| T |
53422845 |
ctggtagtttcagttgccctaaggattcaactcctgatcatatttccaatatcaactatccttcaatagcaatctccaacttcactgggagaggaagtgt |
53422746 |
T |
|
| Q |
315 |
gaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtga |
397 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||||| || |||||| ||||| ||| ||||||||||||| |||| |
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| T |
53422745 |
gaatgtgagtagaactgttacaaatgttggtgaagaggatgaaacagtctactccgccatcgttgatgctcctagtggggtga |
53422663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 26095394 - 26095013
Alignment:
| Q |
16 |
attaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaac |
115 |
Q |
| |
|
||||| |||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||| || |||||| |
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|
| T |
26095394 |
attaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaacaactgaaccactccaac |
26095295 |
T |
|
| Q |
116 |
caggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccc |
215 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
26095294 |
cagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccc |
26095195 |
T |
|
| Q |
216 |
tgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaaagaaactgtg |
315 |
Q |
| |
|
||||| |||||||||||| ||||| || || | |||||||||||||||||||||||| |||||||| ||||| || |||||| |||||||| | | ||| |
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| T |
26095194 |
tgatagtttcaactgccctaaggattcgacgcgtgatcatatttccaatatcaattacccttccatcgcaatctctaacttcggtgggaaaggatcggtg |
26095095 |
T |
|
| Q |
316 |
aatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctactctgccatagttaatgctcctagtggtgtga |
397 |
Q |
| |
|
||||| ||||||| |||||||||||| || |||||||| ||| ||| |||||| ||| | || |||||||| ||||| |||| |
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|
| T |
26095094 |
aatgtcagtagaattgttacaaacgtcggtgaagaggaggaaatagtctactcagccgtcgtcaatgctccgagtggggtga |
26095013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 366
Target Start/End: Complemental strand, 53307857 - 53307497
Alignment:
| Q |
6 |
agcagcacagattaataatatgaaggctcccattactacagatttagggttagttgccacaccttatgactatggagcaggggacataacaacaattgaa |
105 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| || |||| |||| | |||||||||||||||||||||||||||| || |||||||||| |||| |
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|
| T |
53307857 |
agcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaacaactgaa |
53307758 |
T |
|
| Q |
106 |
tcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaactacttgtgttacataggatacaacacaaccactattaaggttatttcaa |
205 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| | ||| |||| || | |
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|
| T |
53307757 |
ccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctcta |
53307658 |
T |
|
| Q |
206 |
aaactgtccctgatactttcaactgccccaaggaatcaactcctgatcatatttccaatatcaattatccttccatagcaatttccaacttcactgggaa |
305 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||| |||||| ||||||| | || || ||||| || |||||||||||||| |||||||||| ||| || |
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|
| T |
53307657 |
aaaccgcccctgatagtttcaactgccccaaggattcaactattgatcatgtctcgaacatcaactacccttccatagcaatctccaacttcattggtaa |
53307558 |
T |
|
| Q |
306 |
agaaactgtgaatgtgagtagaactgttacaaacgttggcgaagaggatgaagtagcctac |
366 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||| || || |||||||||||| ||| |||| |
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|
| T |
53307557 |
agaaacaaagaatgtgagcagaattgtcacaaaagtcggtgaagaggatgaaatagtctac |
53307497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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