View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_high_37 (Length: 408)
Name: NF18068_high_37
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 23742790 - 23742427
Alignment:
| Q |
19 |
tttacaacatccctaacataaattaaattctaatgatcgaaaacaataacaaagcctcccttattaagctgaggcagtcatatgtagtgaaatcttgttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23742790 |
tttacaacatccctaacataaattaaattctaatgatcgaaaacaataacaaagcctcccttattaagctgaggcagtcatatgtagtgaaatcttgtta |
23742691 |
T |
|
| Q |
119 |
gttgtaactagttagattaaagttatagtattgtcctctaaatcactattcaatggcttgtcctatcattttttggttcaattcatacactttgtcggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23742690 |
gttgtaactagttagattaaagttatagtattgtcctctaaatcactattcaatggtttgtcctatcattttttggttcaattcatacactttgtcggtg |
23742591 |
T |
|
| Q |
219 |
taannnnnnnacactgtcaataaattataatcgattaaacttgaaaaatatttcaatttttattataatcacttttaagtcatacatacacaactcataa |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23742590 |
taatttttttacactgtcaataaattataatcgattaaacttgaaaaatatttcaatttttattataatcacttttaagtcatacatacacaactcataa |
23742491 |
T |
|
| Q |
319 |
ttttctttagtttggctctatctctagcactattgaacaagtttcaactaatttactttctttc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23742490 |
ttttctttagtttggctctatctctagcactattgaactagtttcaactaatttactttctttc |
23742427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 23690894 - 23691054
Alignment:
| Q |
44 |
aattctaatgatcgaaaacaataacaaagcctccc-ttattaagctgaggcagtcatatgtagtgaaatcttgttggttgtaactagttagat-taaagt |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || ||||| |||| | ||||| || |||||||||||| |||||| |||| || |||||| |
|
|
| T |
23690894 |
aattctaatgatcgaaaacaataatcaagcctccccttgttaagttgagacggtcatttgcggtgaaatcttgtcacttgtaattagt---atctaaagt |
23690990 |
T |
|
| Q |
142 |
tatagtattgtcctctaaatcactattcaatggcttgtcctatcattttttggttcaattcata |
205 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
23690991 |
tatagtattgttcactaaatcactattcaatggtttgtcctatatttttttggttcatttcata |
23691054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 23688095 - 23688166
Alignment:
| Q |
320 |
tttctttagtttggctctatctctagcactattgaacaagtttcaactaatttactttctttccttagtctt |
391 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||| |||| |||| |
|
|
| T |
23688095 |
tttctttagtttggctctttctctatcactattgaacttgtttcaattaatttactttcttttcttaatctt |
23688166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 23691195 - 23691262
Alignment:
| Q |
324 |
tttagtttggctctatctctagcactattgaacaagtttcaactaatttactttctttccttagtctt |
391 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||| |||| |||| |
|
|
| T |
23691195 |
tttagtttggctccatctctaacactattgaactagtttcagctaatttactttctttacttaatctt |
23691262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 36 - 376
Target Start/End: Complemental strand, 8083516 - 8083188
Alignment:
| Q |
36 |
ataaattaaattctaatgatcgaaaacaataacaaagcctcccttattaagctgaggcagtcatatgtagtgaaatcttgttggttgtaactagttagat |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
8083516 |
ataaattaaattctaatgatcgaaaacaataaccaagcatcccttattaagctgagatagtcatatgtagtgaaatcttgtcagttgtaattagttagat |
8083417 |
T |
|
| Q |
136 |
taaagttatagtattgtcctctaaatcactattcaatggcttgtcctatcattttttggttcaattcatacactttgtcggtgtaa-nnnnnnnacactg |
234 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||| | ||| |
|
|
| T |
8083416 |
taaagttatagcattgtcctctaaatcaacattcaa----------tatcattttttggttcaattcatatactttctcggtgtaattttttttatgctg |
8083327 |
T |
|
| Q |
235 |
tcaataaattataatcgattaaacttgaaaaatatttcaatttttattataatcacttttaagtcatacatacacaactcataattttctttagtttggc |
334 |
Q |
| |
|
|| |||||||||||| | | || ||| |||||||||| | |||| ||||||| |||||||||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
8083326 |
tcgataaattataattgttaaatctttaaaaatatttaatttttcattataaccacttttaagtcat---tacacaactcataattttttttagtccggc |
8083230 |
T |
|
| Q |
335 |
tctatctctagcactattgaacaagtttcaactaatttactt |
376 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
8083229 |
tctatctctagcaccattgaactagtttcaactaatttactt |
8083188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University