View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_38 (Length: 405)
Name: NF18068_high_38
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 21123592 - 21123221
Alignment:
| Q |
15 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
114 |
Q |
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| T |
21123592 |
tatccagcatggtgaccaagatcctcaatagaaggaccaccagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
21123493 |
T |
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| Q |
115 |
gagaatgatcaccgtgaattacattaactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaatgttgttga |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21123492 |
gagaatgatcaccatgaattacattaactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaatgttgttga |
21123393 |
T |
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| Q |
215 |
tggaaagcgtgcatgatttatgatacgagaagttgcatatgagacagaaaataaaatgaagaacnnnnnnngaggcaaagaggttttggagaatcccatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21123392 |
tggaaagcgtgcatgatttatgatacgagaagttgcatatgagacagaaaataaaatgaagaacaaaaaaagaggcaaagaggttttggagaatcccatg |
21123293 |
T |
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| Q |
315 |
ttgtttgttcttgtttgtgaaaaaagtgaagtaatgtgggaatgtttttatagcattcagagaacattcaaacg |
388 |
Q |
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| T |
21123292 |
ttgtttgttcttgtttgtgaaaaaagtgaagcaa--tgggaatgtttttatagcattcagagaacattcaaacg |
21123221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 21143515 - 21143324
Alignment:
| Q |
15 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
114 |
Q |
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||||| ||||| ||||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||| || | ||||||||||| |
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| T |
21143515 |
tatccggcatgatgaccaagatcttcaatagaaggaccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaa |
21143416 |
T |
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| Q |
115 |
gagaatgatcaccgtgaattacattaactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaat |
206 |
Q |
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||| |||||||| ||||||| |||||||| | |||||| |||||||| |||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
21143415 |
tagagtgatcaccatgaattatattaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaat |
21143324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 21149326 - 21149136
Alignment:
| Q |
15 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
114 |
Q |
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||||| |||||||||||||||| |||||||| | ||| |||||| |||||||||||||||||| ||||| ||||||||||| || | ||||| ||||| |
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| T |
21149326 |
tatccggcatggtgaccaagattatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaa |
21149227 |
T |
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| Q |
115 |
gagaatgatcaccgtgaattacattaactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaa |
205 |
Q |
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| T |
21149226 |
ggacagaatgaccatgtatcatcttaaccggattctttgggaataagttaaggcttctaatgagcttttctgctcgttgatttggtgaaaa |
21149136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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