View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_40 (Length: 400)
Name: NF18068_high_40
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 6377707 - 6377327
Alignment:
| Q |
20 |
atagagattaggtttagccaataacattatgaagnnnnnnnnnncggcctactctagaaacaaattctagcaccaaactaatcacaaacaaacatcacaa |
119 |
Q |
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| T |
6377707 |
atagagattaggtttagccaataacattatgaagagaaaaaaaacggcctactctagaaacaaattctagcaccaaactaatcacaaacaaacatcacaa |
6377608 |
T |
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| Q |
120 |
caatgaccctttaaactttgagattaatttgaataatagggcgaaagatgttcaaaaatggacagagttattcaaggtagtccagtttagggtttccctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6377607 |
caatgaccctttaaactttgagattaatttgaataatagggcgaaagatgttcaaaaatggacagagttattcaaggtagtccagtttagggtttccctt |
6377508 |
T |
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| Q |
220 |
tattaaggacctcaatcaagtgcatgttagtggcagtccagtttgaagacattcaaaattttgtctattttgtaattagctttcaaatgtgtccctttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
6377507 |
tattaaggacctcaatcaagtgcatgttagtggcagtccagtttgaagacattcaaaattttgtttattttgtaattagctttcaaatgtgttactttta |
6377408 |
T |
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| Q |
320 |
gccatcattgttactgggtaattttnnnnnnnnnnngactaaaagctattacattcacgaatagttctaaaaaattacagc |
400 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6377407 |
gccatcattgttactggataattttttttaaaaaaagactaaaagctattacattcacgaatagttctaaaaaattacagc |
6377327 |
T |
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