View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_41 (Length: 399)

Name: NF18068_high_41
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_41
NF18068_high_41
[»] chr3 (24 HSPs)
chr3 (1-386)||(10183454-10183840)
chr3 (48-386)||(10662789-10663127)
chr3 (48-386)||(10031266-10031604)
chr3 (48-386)||(10126190-10126529)
chr3 (48-386)||(10259960-10260299)
chr3 (141-230)||(11160629-11160718)
chr3 (141-230)||(11131638-11131727)
chr3 (141-230)||(11153756-11153845)
chr3 (141-230)||(8860654-8860743)
chr3 (141-230)||(10888674-10888763)
chr3 (141-230)||(11149466-11149555)
chr3 (141-193)||(11162767-11162819)
chr3 (141-231)||(10434655-10434745)
chr3 (120-170)||(10526706-10526756)
chr3 (125-181)||(10516840-10516896)
chr3 (292-331)||(10076785-10076824)
chr3 (143-193)||(10499947-10499997)
chr3 (141-231)||(13170399-13170489)
chr3 (141-231)||(13332272-13332362)
chr3 (345-386)||(13289237-13289278)
chr3 (345-386)||(13332476-13332517)
chr3 (345-386)||(13343661-13343702)
chr3 (55-95)||(9996487-9996527)
chr3 (55-95)||(10217505-10217545)
[»] chr8 (1 HSPs)
chr8 (88-386)||(11484330-11484630)
[»] chr6 (1 HSPs)
chr6 (143-225)||(31680356-31680438)
[»] chr4 (2 HSPs)
chr4 (114-193)||(17853569-17853648)
chr4 (176-230)||(8438888-8438942)
[»] scaffold0002 (1 HSPs)
scaffold0002 (141-231)||(136499-136589)
[»] chr7 (1 HSPs)
chr7 (168-230)||(22827528-22827590)
[»] chr5 (1 HSPs)
chr5 (55-95)||(26796976-26797016)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 10183454 - 10183840
Alignment:
Q  1 aataagtcttcttgagtctacctttgctgtatgcacaatcaaccattcaattatttctatcattcaatcttcatagttcttaatttccttcaaaatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10183454 aataagtcttcttgagtctacctttgctgtatgcacaatcaaccattcaattatttctatcattcaatcttcatagttcttaatttccttcaaaatttca 10183553  T
Q  101 tctaaaacttttatccttcctgctttactata-ccaatcagagatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatg 199  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||| ||||| || |||||||||||| |    
T  10183554 tctaaaacttttatccttgctggtttactataaccaatcagagatggctgcagttttgattggaggtgcatttctggctgctactcttcaaaccttaacg 10183653  T
Q  200 gacaaactaacttcaaaagagtttcgtgattatttcacaaaaacagagttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgagg 299  Q
    ||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10183654 gacaaactagcttcaatcgagtttcgtgattatatcacaaaaacagagttgaatgaatcattgatagatgagatggaaacaagtctacttactcttgagg 10183753  T
Q  300 ttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10183754 ttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgatg 10183840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 48 - 386
Target Start/End: Original strand, 10662789 - 10663127
Alignment:
Q  48 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttcctgctttactataccaatcagagatggc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10662789 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttttccttgctgctttactataccaatcagagatggc 10662888  T
Q  148 tgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgattatttcacaaaaacagag 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||    
T  10662889 tgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacctgagtttcgtgattatttcacaagaacagag 10662988  T
Q  248 ttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatca 347  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10662989 ttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatca 10663088  T
Q  348 aacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10663089 aacaatggttggatcggttaaaagatgcaatctatgatg 10663127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 48 - 386
Target Start/End: Original strand, 10031266 - 10031604
Alignment:
Q  48 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttcctgctttactataccaatcagagatggc 147  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10031266 caattatttctatcattcgatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttgctgctttactataccaatcagagatggc 10031365  T
Q  148 tgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgattatttcacaaaaacagag 247  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||||| ||    
T  10031366 tgcagctttggttggaggtgcatttctgtctgctactcttcaaaccttaatggacaaactaacttcaaccgagtttcgtgattatataacaaaaacaaag 10031465  T
Q  248 ttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatca 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031466 ttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatca 10031565  T
Q  348 aacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10031566 aacaatggttggatcggttaaaagatgcaatctatgatg 10031604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 386
Target Start/End: Original strand, 10126190 - 10126529
Alignment:
Q  48 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttcctgctttactata-ccaatcagagatgg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10126190 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttgctgctttactataaccaatcagagatgg 10126289  T
Q  147 ctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgattatttcacaaaaacaga 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  10126290 ctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacctgagtttcgtgattatttcacaagaacaga 10126389  T
Q  247 gttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatc 346  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126390 gttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatc 10126489  T
Q  347 aaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  10126490 aaacaatggctggatcggttaaaagatgcaatctatgatg 10126529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 386
Target Start/End: Original strand, 10259960 - 10260299
Alignment:
Q  48 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttatccttcctgctttactata-ccaatcagagatgg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  10259960 caattatttctatcattcaatcttcatagttcttaatttccttcaaaatttcatctaaaacttttttccttgctgctttactataaccaatcagagatgg 10260059  T
Q  147 ctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgattatttcacaaaaacaga 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||    
T  10260060 ctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacccgagtttcgtgattatttcacaagaacaga 10260159  T
Q  247 gttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatc 346  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10260160 gttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatc 10260259  T
Q  347 aaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10260260 aaacaatggttggatcggttaaaagatgcaatctatgatg 10260299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 11160718 - 11160629
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||||||| || | ||||||||| ||||||  |||||||||||||    
T  11160718 agattgctgcaactttggttggaggtgcatttctatctgcttctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatt 11160629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 11131727 - 11131638
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |  | ||||||||||||||||  |||||||||||||    
T  11131727 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgacaaactaacttcaactgagtttcgtgatt 11131638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 11153845 - 11153756
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||| | ||| ||  | |||||||||||||||| ||||||||||||||    
T  11153845 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcgtgatt 11153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 8860654 - 8860743
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |  | ||| ||||||||||||  |||||||||||||    
T  8860654 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaaccgagtttcgtgatt 8860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 10888674 - 10888763
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |  | ||| ||||||||||||  |||||||||||||    
T  10888674 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaactgagtttcgtgatt 10888763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 11149555 - 11149466
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| |||| | |  | ||| ||||||||||||  |||||||||||||    
T  11149555 agatggctgcaactttggttggaggtgcatttctctctgcttctgtccaaagcatgcttgaccaactaacttcaactgagtttcgtgatt 11149466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 11162819 - 11162767
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaacc 193  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  11162819 agatggctgcaactttggttggaggtgcatttctatctgcttctattcaaacc 11162767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 10434745 - 10434655
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatta 231  Q
    ||||||||||| || || | ||||| || ||||| |||||  |||||||||||||| | || |||||  ||||||||||||||||||||||    
T  10434745 agatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgatta 10434655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 10526706 - 10526756
Alignment:
Q  120 ctgctttactataccaatcagagatggctgcagctttggttggaggtgcat 170  Q
    |||||||||| ||||||||||| ||||||||||||||||| | ||||||||    
T  10526706 ctgctttactttaccaatcagatatggctgcagctttggtcgcaggtgcat 10526756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 10516840 - 10516896
Alignment:
Q  125 ttactataccaatcagagatggctgcagctttggttggaggtgcatttctgtctgct 181  Q
    ||||| |||||| || | |||||||||||||||||||||||||| ||||| ||||||    
T  10516840 ttactttaccaagcaaacatggctgcagctttggttggaggtgcgtttctctctgct 10516896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 331
Target Start/End: Original strand, 10076785 - 10076824
Alignment:
Q  292 tcttgaggttgtactagatgatgcagaggagaagcagatc 331  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10076785 tcttcaggctgtactagatgatgcagaggagaagcagatc 10076824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 10499947 - 10499997
Alignment:
Q  143 atggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaacc 193  Q
    ||||||||||||||||| ||||| |||||||| |||||| || ||||||||    
T  10499947 atggctgcagctttggtgggaggcgcatttctttctgctactattcaaacc 10499997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 13170399 - 13170489
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatta 231  Q
    ||||||||||| ||||||| ||||| || ||||| |||||| ||||||| || ||| | || |||||  ||||| |||||||| |||||||    
T  13170399 agatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgatta 13170489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 13332272 - 13332362
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatta 231  Q
    ||||||||||| ||||||| ||||| || ||||| |||||| ||||||| || ||| | || |||||  ||||| |||||||| |||||||    
T  13332272 agatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgatta 13332362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 13289237 - 13289278
Alignment:
Q  345 tcaaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  13289237 tcaaacaatggttggatcagctgaaagatgcaatctatgatg 13289278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 13332476 - 13332517
Alignment:
Q  345 tcaaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  13332476 tcaaacaatggttggatcagctgaaagatgcaatctatgatg 13332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 13343661 - 13343702
Alignment:
Q  345 tcaaacaatggttggatcggttaaaagatgcaatctatgatg 386  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  13343661 tcaaacaatggttggatcagctgaaagatgcaatctatgatg 13343702  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 9996487 - 9996527
Alignment:
Q  55 ttctatcattcaatcttcatagttcttaatttccttcaaaa 95  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  9996487 ttctatccttcaatcttcatagctcttaatttccttaaaaa 9996527  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 10217505 - 10217545
Alignment:
Q  55 ttctatcattcaatcttcatagttcttaatttccttcaaaa 95  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  10217505 ttctatccttcaatcttcatagctcttaatttccttaaaaa 10217545  T

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Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 88 - 386
Target Start/End: Original strand, 11484330 - 11484630
Alignment:
Q  88 cttcaaaatttcatctaaaactttt-atccttc-ctgctttactataccaatcagagatggctgcagctttggttggaggtgcatttctgtctgcttctg 185  Q
    |||||||||||||| || ||||||| ||||||  || ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  11484330 cttcaaaatttcatttacaactttttatcctttgcttctttactttaccattcagagatggctgcagctttgattggaggtgcatttctgtctgcttcag 11484429  T
Q  186 ttcaaaccttaatggacaaactaacttcaaaagagtttcgtgattatttcacaaaaacagagttgaatgaatcattgatggatgagatggaaacaagtct 285  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||  |||||||||||||||||||||| || ||||||||||  ||    
T  11484430 ttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaaaaccaagttgaatgaatcattgatggaagaaatggaaacaacact 11484529  T
Q  286 acttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgat 385  Q
    |||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||| ||||||||||||| | |||||||| ||||||||||||| ||||    
T  11484530 acttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgat 11484629  T
Q  386 g 386  Q
    |    
T  11484630 g 11484630  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 31680438 - 31680356
Alignment:
Q  143 atggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcg 225  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||||  |||||||||  ||||| |||  |||||||||    
T  31680438 atggctgcaactttggtgggaggtgcatttctctctgcttctgttcaaacaataatggacaggctaacatcaccagagtttcg 31680356  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 17853648 - 17853569
Alignment:
Q  114 tccttcctgctttactataccaatcagagatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaacc 193  Q
    ||||| |||||||||| ||||||||| | ||||||||| ||||||| | |||||||||||| |||||| || ||||||||    
T  17853648 tccttgctgctttactttaccaatcaaatatggctgcaactttggtggcaggtgcatttctctctgctactattcaaacc 17853569  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 8438888 - 8438942
Alignment:
Q  176 tctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    |||||||||||||||||  || | |||||||||||||||| ||||||| ||||||    
T  8438888 tctgcttctgttcaaacactacttgacaaactaacttcaacagagtttggtgatt 8438942  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 136589 - 136499
Alignment:
Q  141 agatggctgcagctttggttggaggtgcatttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatta 231  Q
    ||||||||||| ||||||| ||||| || ||||| |||||| ||||||| || ||| | || |||||  ||||| |||||||| |||||||    
T  136589 agatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgatta 136499  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 22827528 - 22827590
Alignment:
Q  168 catttctgtctgcttctgttcaaaccttaatggacaaactaacttcaaaagagtttcgtgatt 230  Q
    ||||||| |||||||||| ||||||  || | |||||||||||||||| ||||||| ||||||    
T  22827528 catttctctctgcttctgatcaaacactacttgacaaactaacttcaacagagtttggtgatt 22827590  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 26796976 - 26797016
Alignment:
Q  55 ttctatcattcaatcttcatagttcttaatttccttcaaaa 95  Q
    ||||||| |||||||||||||| ||||||||||||| ||||    
T  26796976 ttctatccttcaatcttcatagctcttaatttccttaaaaa 26797016  T

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