View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_42 (Length: 399)
Name: NF18068_high_42
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 46290220 - 46290584
Alignment:
| Q |
17 |
caaagggcgtaagaattgttacctggtaccctactgacacaagctgcaagtttctctgtgacaatgctttcagccaatttcttacctgcacaaaaccaat |
116 |
Q |
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| T |
46290220 |
caaagggcgtaagaattgttacctggtaccctattgacacaagctgcaagtttctcagtgacaatgctttcagccaatttcttacctgcacaaaaccaat |
46290319 |
T |
|
| Q |
117 |
aacatgcatcaaatcaaacaaacaatcacacaattaaattaattaaatacataa-gcttagaagatattaaaacaatgacgcgacctgcttctttgttgg |
215 |
Q |
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| T |
46290320 |
aacatgcatcaaatcaaacaaacaatcacacaattaaattaattaaacacataaagcttagaagatattaaaacaatcacgcgacctgcttctttgttgg |
46290419 |
T |
|
| Q |
216 |
gaacagttacatatacaacgatacttggaacagtggtgttattggtattcccttccattctaatgaaattgctactctttgttgaaaacctgctactcaa |
315 |
Q |
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| T |
46290420 |
gaacagttacatatacaacgatacttggaacagtggtgttattggtattcccttccattctgatgaaattgctactctttgttgaaaacctgctactcaa |
46290519 |
T |
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| Q |
316 |
tttggatctgaaacaaaacaacagaagcaattcaacaaaacatatagacagatagcaatgaatag |
380 |
Q |
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| T |
46290520 |
tttggatctgaaacaaaacaacagaagcaattcaacaaaacatatagacagatagaaatgaatag |
46290584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 35 - 363
Target Start/End: Original strand, 2528052 - 2528384
Alignment:
| Q |
35 |
ttacctggtaccctactgacacaagctgcaagtttctctgtgacaatgctttcagccaatttcttacctgcacaaaaccaataacatgcatcaaatcaaa |
134 |
Q |
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| T |
2528052 |
ttacctggtaccctattgacacaagctgcaagtttct--gtgacaatgctttcagccaatttcttacctgcacaa--ccaataacatgcatcaaatcaaa |
2528147 |
T |
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| Q |
135 |
caaacaatcacacaattaaa-ttaattaaatacataagcttagaaga--tattaaaacaatgacgcgacctgcttctttgttgggaacagttacatatac |
231 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
2528148 |
caaacaatcacaacattaaaattaattaaatacataagccaagaagagatattaaaacaatcacgcgacctgcttctttgttgggaacagtaacatatac |
2528247 |
T |
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| Q |
232 |
aacgatacttggaacagtggtgttattggtattcccttcc-----attctaatgaaattgctactctttgttgaaaacctgctactcaatttggatctga |
326 |
Q |
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|| ||| |||||||||||||||||||| ||||||| ||| ||| |||||||||| || |||||||||||||||||||| ||||||| ||||||| |
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| T |
2528248 |
aaggatgcttggaacagtggtgttatttgtattcctgtccattatattataatgaaattactgttctttgttgaaaacctgctattcaatttagatctga |
2528347 |
T |
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| Q |
327 |
aacaaaacaacagaagcaattcaacaaaacatataga |
363 |
Q |
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| T |
2528348 |
aacaaaacaagagaagcaattcaacaaaatatataga |
2528384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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