View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_43 (Length: 398)
Name: NF18068_high_43
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 128 - 366
Target Start/End: Original strand, 1714880 - 1715118
Alignment:
| Q |
128 |
ccaatttgaacaaaaaataataatttaactacaaccggaacaatattagttaaacttgtggtatattctaaaatattgagaacataccataaatatacaa |
227 |
Q |
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| T |
1714880 |
ccaatttgaccaaaaaataataatttaactacaaccggaacaatattagttaaacttgtggtatattctaaaatattgagaacatgccataaatatacaa |
1714979 |
T |
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| Q |
228 |
gtaaaaacgaatacaatagttctagtcttgacgctagtgacgacaatttctttcttccacaagcataattaaggaaaaatgatataattattagttaaag |
327 |
Q |
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| T |
1714980 |
gtaaacacgaatacaatagttctagtcttgacgctagtgacgacaatttctttcttccacaagcatgattaaggaaaaatgatataattattagttaaag |
1715079 |
T |
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| Q |
328 |
caaacgaacatagaatgaaagagatgcaatgcggaattg |
366 |
Q |
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| T |
1715080 |
caaacgaacatagaatgaaagagatgcaatgcggaattg |
1715118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 1713382 - 1713439
Alignment:
| Q |
10 |
gcataggccacatggagaatatatgttacacatattgctataaattcaatcaatttgc |
67 |
Q |
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| T |
1713382 |
gcataggccacatggagaatatatgttacaaatattgctacaaattcaatcaatttgc |
1713439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 30016502 - 30016559
Alignment:
| Q |
10 |
gcataggccacatggagaatatatgttacacatattgctataaattcaatcaatttgc |
67 |
Q |
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| T |
30016502 |
gcataggctacatggagaatgtatgttacacctattgctacaaattcaatcaacttgc |
30016559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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