View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_48 (Length: 371)

Name: NF18068_high_48
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_48
NF18068_high_48
[»] scaffold0328 (1 HSPs)
scaffold0328 (22-335)||(3012-3324)
[»] chr8 (8 HSPs)
chr8 (175-331)||(27931451-27931607)
chr8 (175-270)||(12110130-12110225)
chr8 (175-273)||(14424311-14424409)
chr8 (176-271)||(32343282-32343377)
chr8 (176-271)||(32355769-32355864)
chr8 (176-271)||(32372419-32372514)
chr8 (184-320)||(10691426-10691561)
chr8 (176-271)||(32359888-32359983)
[»] chr7 (8 HSPs)
chr7 (176-311)||(20332105-20332240)
chr7 (140-273)||(15706121-15706255)
chr7 (174-254)||(36054301-36054380)
chr7 (184-248)||(19144584-19144648)
chr7 (184-248)||(20743983-20744047)
chr7 (175-273)||(9418513-9418612)
chr7 (140-271)||(6628515-6628646)
chr7 (203-271)||(10882398-10882465)
[»] chr6 (12 HSPs)
chr6 (114-335)||(20075598-20075820)
chr6 (178-273)||(6442470-6442565)
chr6 (174-273)||(20071819-20071917)
chr6 (194-271)||(31136024-31136101)
chr6 (176-265)||(22917286-22917374)
chr6 (204-273)||(30631608-30631676)
chr6 (182-259)||(2401690-2401767)
chr6 (229-273)||(10291206-10291250)
chr6 (176-271)||(25945278-25945372)
chr6 (185-220)||(10291246-10291281)
chr6 (170-273)||(30740045-30740147)
chr6 (176-239)||(22902444-22902507)
[»] chr4 (3 HSPs)
chr4 (146-273)||(12247667-12247796)
chr4 (181-273)||(10979319-10979411)
chr4 (185-235)||(56079820-56079870)
[»] chr2 (4 HSPs)
chr2 (178-273)||(13691274-13691369)
chr2 (175-273)||(20187308-20187405)
chr2 (175-251)||(21690833-21690909)
chr2 (202-270)||(40584704-40584770)
[»] chr3 (7 HSPs)
chr3 (184-335)||(19583122-19583272)
chr3 (192-273)||(3258970-3259051)
chr3 (194-271)||(3286459-3286536)
chr3 (184-271)||(931886-931972)
chr3 (181-220)||(12391586-12391625)
chr3 (196-271)||(35510971-35511044)
chr3 (245-273)||(54287820-54287848)
[»] chr1 (3 HSPs)
chr1 (175-271)||(12301224-12301319)
chr1 (191-271)||(14911072-14911150)
chr1 (183-257)||(18541492-18541566)
[»] scaffold0533 (1 HSPs)
scaffold0533 (292-332)||(2418-2458)


Alignment Details
Target: scaffold0328 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 3012 - 3324
Alignment:
Q  22 atttgaagatttcttctgaagtagcgttgacgaagtttttctttctttcaagatgttttatgtgttaacatgaaagaaggtgtttctgtaaacctcctgc 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  3012 atttaaagatttcttctgaagtagcgttgacgaagtttttctttctttcaagatgttttatgtgttaacatgaaagaaggtgtctttgtaaaccacctgc 3111  T
Q  122 taacattggtttattattaaagagtgttttagccaaaattttccaaaaggaggttgttgggtttttatattgtgttggcggcattttgttaaaacaagaa 221  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3112 taatattggtttattattaaagagtgttttagccaaaattttccaaaagggggttgttgggtttttatattgtgttggctgcattttgttaaaacaagaa 3211  T
Q  222 tttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatcttttctcaaagtgttatgatttgtttcgctttcttggaagatttggtttt 321  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  3212 tttctagcaagatgttggaccaaatttcttagacatgtaagtacgacatcttgtctcaaagtgttatgatttgtttcgctttcttggaag-tttggtttt 3310  T
Q  322 tacgttagatctct 335  Q
    ||||| ||||||||    
T  3311 tacgtgagatctct 3324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 27931451 - 27931607
Alignment:
Q  175 ttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatcttt 274  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||     
T  27931451 ttgttgggttttgatattgtgttggctgcattttgttaaaacaagaagttctagcaagatgttggatcagatgtcctagacatgtaagtacgacatcttg 27931550  T
Q  275 tctcaaagtgttatgatttgtttcgctttcttggaagatttggtttttacgttagat 331  Q
    |||||| |||||||  ||| |||| | |||||  |||||||||||||||||| ||||    
T  27931551 tctcaaggtgttatcctttatttcacgttctttaaagatttggtttttacgtgagat 27931607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 12110225 - 12110130
Alignment:
Q  175 ttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacat 270  Q
    ||||||||||||  |||||||||||| ||||||||||||||||| |  ||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  12110225 ttgttgggttttggtattgtgttggctgcattttgttaaaacaatatgttctagcaagacgttgtaccaaatatcttagacatgtaagtacgacat 12110130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 14424409 - 14424311
Alignment:
Q  175 ttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    ||||| |||||||||||| ||||| |  ||||||||||||||||||  || |||||||||||||||||| ||||| || |||||| |||||||||||||    
T  14424409 ttgttaggtttttatattatgttgaccacattttgttaaaacaagatgttatagcaagatgttggaccagatgtcctaaacatgttagtacgacatctt 14424311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 32343377 - 32343282
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||||||||||||||||||||||  | ||||||| |||||||||| ||||| ||||||||||||| | ||||| |  |||||| |||||||||||    
T  32343377 tgttgggtttttatattgtgttggttgtattttgtgaaaacaagaagttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatc 32343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 32355864 - 32355769
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||||||||||||||||||||||  | ||||||| |||||||||| ||||| ||||||||||||| | ||||| |  |||||| |||||||||||    
T  32355864 tgttgggtttttatattgtgttggttgtattttgtgaaaacaagaagttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatc 32355769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 32372514 - 32372419
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||||||||||||||||||||||  | |||||||||||||||||| ||||| ||||||||||||  | ||||| |  |||||| |||||||||||    
T  32372514 tgttgggtttttatattgtgttggttgtattttgttaaaacaagaagttctaacaagatgttggagaagatgtcatgaacatgtgagtacgacatc 32372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 10691426 - 10691561
Alignment:
Q  184 ttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatcttttctcaaagt 283  Q
    ||||||||||||||||||  |||||||||||||||||  |||||| ||| ||||| | || ||||| ||||||||| ||||||||||||   || || ||    
T  10691426 ttttatattgtgttggcgt-attttgttaaaacaagatgttctagtaagttgttgaatcagatgtcctagacatgttagtacgacatctaaacttaaggt 10691524  T
Q  284 gttatgatttgtttcgctttcttggaagatttggttt 320  Q
    |   || ||||||||||  ||||||||||||||||||    
T  10691525 gaagtgttttgtttcgcaatcttggaagatttggttt 10691561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 32359983 - 32359888
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||| ||||||||||||||||||  | ||||||| |||||||||| ||||| ||||||||||||| | ||||| |  |||||| |||||||||||    
T  32359983 tgttgcgtttttatattgtgttggttgtattttgtgaaaacaagaagttctaacaagatgttggacaagatgtcatgaacatgtgagtacgacatc 32359888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 20332105 - 20332240
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctttt 275  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||| |    
T  20332105 tgttaggtttttatattgtgttggctgcattttgttaaaacaagaagttctagcaagatgttggaccagatgtattagacatgtaagtacaacatcttgt 20332204  T
Q  276 ctcaaagtgttatgatttgtttcgctttcttggaag 311  Q
    ||||| |||||||| |||||||| | ||||||||||    
T  20332205 ctcaaggtgttatgctttgtttcacattcttggaag 20332240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 273
Target Start/End: Complemental strand, 15706255 - 15706121
Alignment:
Q  140 aaagagtgttttagccaaaattttccaaaagg--aggttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgtt 237  Q
    ||||| |||||||| ||||||||||| || ||  || | |||||||||| |||||||||| ||   |||||||||||| ||||  |||||| ||||||||    
T  15706255 aaagattgttttaggcaaaattttcctaatggggagatcgttgggtttt-atattgtgtttgccagattttgttaaaataagatgttctaggaagatgtt 15706157  T
Q  238 ggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||| ||||| ||||||||| |||| ||||||||    
T  15706156 ggaccatatgtcctagacatgttagtaagacatctt 15706121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 36054380 - 36054301
Alignment:
Q  174 gttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttaga 254  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||   |||||||||||||||| |||| ||||| ||||    
T  36054380 gttgttgggtttt-atattgtgttggccgcattttgttaaaacaagttgttctagcaagatgttgaaccagatgtcctaga 36054301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 19144584 - 19144648
Alignment:
Q  184 ttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgt 248  Q
    ||||||||||||||||  ||||||||||||||||| |   | |||||||||||||||||| ||||    
T  19144584 ttttatattgtgttggttgcattttgttaaaacaatatgctatagcaagatgttggaccagatgt 19144648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 20743983 - 20744047
Alignment:
Q  184 ttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgt 248  Q
    ||||||||||||||||  ||||||||||||||||| |   | |||||||||||||||||| ||||    
T  20743983 ttttatattgtgttggttgcattttgttaaaacaatatgctatagcaagatgttggaccagatgt 20744047  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 9418513 - 9418612
Alignment:
Q  175 ttgttgggtttttatat-tgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||| |||||||| | ||||||||  |||||||||||||||||||  ||||| ||| |||||| |  | ||||| || |||||||| |||||||||||    
T  9418513 ttgttgagtttttatttatgtgttggttgcattttgttaaaacaagaggttctaacaatatgttgtattagatgtcctaaacatgtaaatacgacatctt 9418612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 6628515 - 6628646
Alignment:
Q  140 aaagagtgttttagccaaaattttccaaaaggagg-ttgttgggtttttatattgtg-ttggcggcattttgttaaaacaagaatttctagcaagatgtt 237  Q
    ||||| ||||||||| |||||||  |||| || || ||||| ||||| ||  ||||| ||||| |||||||||||||| |||  || |||||||||||||    
T  6628515 aaagattgttttagctaaaatttgtcaaaggggggattgttaggtttgtagtttgtgattggcagcattttgttaaaataagtgtt-ctagcaagatgtt 6628613  T
Q  238 ggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    |||| | |||||||| ||||||  ||||||||||    
T  6628614 ggacaagatgtctta-acatgttggtacgacatc 6628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 10882465 - 10882398
Alignment:
Q  203 cattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    |||||||||||||||| | ||||| ||||||| ||| |||| ||| | ||||||||| |||||||||||    
T  10882465 cattttgttaaaacaatattttctggcaagattttgtaccagatgacctagacatgt-agtacgacatc 10882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 20075598 - 20075820
Alignment:
Q  114 cctcctgctaacattggtttattattaaagagtgttttagccaaaattttccaaaa--ggaggttgttgggtttttatattgtgttggcggcattttgtt 211  Q
    ||||||||| ||||||||||||||||||| ||||| || || ||| |||| ||||   |||| ||||||| |||||||||||||||||| ||||||||||    
T  20075598 cctcctgcttacattggtttattattaaaaagtgtgttcgcaaaattttttcaaagagggagattgttggatttttatattgtgttggctgcattttgtt 20075697  T
Q  212 aaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatcttttctcaaagtgttatgatttgtttcgctttcttggaag 311  Q
     ||||||||| |||||| |||||||| ||||| | ||| ||||||||||||||| |||| ||  |  || |||   || ||| | |||| ||||||||||    
T  20075698 -aaacaagaagttctagaaagatgtttgaccataagtcctagacatgtaagtacaacattttagcataaggtgaagtgctttatctcgcgttcttggaag 20075796  T
Q  312 atttggtttttacgttagatctct 335  Q
    ||||| ||||||| | ||||||||    
T  20075797 atttgatttttacatgagatctct 20075820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 6442565 - 6442470
Alignment:
Q  178 ttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||| |||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||  ||| |||||  ||||||||||||||||||||||    
T  6442565 ttggatttttatattgtgttggctgcattttgttaaaataagatgttctagcaagatgttgtgccagatgtccaagacatgtaagtacgacatctt 6442470  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 20071819 - 20071917
Alignment:
Q  174 gttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||||| |||||||||| |||  ||||||||| ||| ||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  20071819 gttgttgggtttctatattgtgtcggctacattttgttgaaa-aagaagttctagcaagatgttggaccagatgacctagacatgtaagtacgacatctt 20071917  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 31136024 - 31136101
Alignment:
Q  194 tgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||| || || ||||||||| |||||||||||    
T  31136024 tgttggccgcattttgttaaaacaagatgttctagcaagatgttggaccagatttcctagacatgttagtacgacatc 31136101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 22917286 - 22917374
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtac 265  Q
    |||||||||||||| |||||||||| ||||| |||||||| ||||  |||||||||||||||||  ||  |||| ||||||||| |||||    
T  22917286 tgttgggtttttat-ttgtgttggccgcattatgttaaaataagatattctagcaagatgttgggacagttgtcctagacatgttagtac 22917374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 30631676 - 30631608
Alignment:
Q  204 attttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    ||||||||||||||||||||| |||||| |||||| | || ||||| | |||||||||||||||||||||    
T  30631676 attttgttaaaacaagaattt-tagcaaaatgttgtatcagatgtcctcgacatgtaagtacgacatctt 30631608  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 2401767 - 2401690
Alignment:
Q  182 gtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgt 259  Q
    ||||||||||||||||||| ||||||||||||||||  |  ||||||||| | ||| ||||| ||||| || ||||||    
T  2401767 gtttttatattgtgttggctgcattttgttaaaacattatgttctagcaaaacgtttgaccagatgtcctaaacatgt 2401690  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 10291250 - 10291206
Alignment:
Q  229 caagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||||||||||| || ||||||||| |||||||||||||    
T  10291250 caagatgttggaccaaatatcctagacatgttagtacgacatctt 10291206  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 25945372 - 25945278
Alignment:
Q  176 tgttgggtttttatattgtg-ttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    |||| ||||||||||||||  ||||| ||||||||||||||||||   ||| ||||||||||||||||| ||||| | |||||||  ||||||||||    
T  25945372 tgttaggtttttatattgtaattggccgcattttgttaaaacaag-tgttccagcaagatgttggaccatatgtcgt-gacatgttggtacgacatc 25945278  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 10291281 - 10291246
Alignment:
Q  185 tttatattgtgttggcggcattttgttaaaacaaga 220  Q
    |||||||||||||||| |||||||||||||||||||    
T  10291281 tttatattgtgttggccgcattttgttaaaacaaga 10291246  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 30740045 - 30740147
Alignment:
Q  170 ggaggttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgaca 269  Q
    |||| |||||||||||| ||||||||||    | |||||||||||| |||   ||||||||| |||||| ||||  |||||||| |||||||||| ||||    
T  30740045 ggagtttgttgggtttt-atattgtgttaaatgtattttgttaaaataagttgttctagcaaaatgttgtaccaggtgtcttagtcatgtaagtatgaca 30740143  T
Q  270 tctt 273  Q
    ||||    
T  30740144 tctt 30740147  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 22902444 - 22902507
Alignment:
Q  176 tgttgggtttttatattgtgttggcggcattttgttaaaacaagaat-ttctagcaagatgttgg 239  Q
    |||||| ||||||| |||||||||| ||||| |||||||| || ||| |||||||||||||||||    
T  22902444 tgttggatttttat-ttgtgttggccgcattatgttaaaaaaaaaatattctagcaagatgttgg 22902507  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 12247667 - 12247796
Alignment:
Q  146 tgttttagccaaaattttccaaaaggagg--ttgttgggtttttatat-tgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggacc 242  Q
    ||||||||||||||||| ||||| ||||   ||||||| ||||||  | ||||||||  ||||||||||||||||||||||||||||| ||||||| | |    
T  12247667 tgttttagccaaaatttgccaaatggagagattgttggatttttaattatgtgttggttgcattttgttaaaacaagaatttctagcatgatgttgta-c 12247765  T
Q  243 aaatgtcttagacatgtaagtacgacatctt 273  Q
    ||||||| |||||||||||||||||||||||    
T  12247766 aaatgtcctagacatgtaagtacgacatctt 12247796  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 10979319 - 10979411
Alignment:
Q  181 ggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    ||||||| |||||||||  | |||||||||||||| ||||| ||||||||| |||||| | || ||||| |||||||||||||||||||||||    
T  10979319 ggtttttgtattgtgttatctgcattttgttaaaataagaagttctagcaacatgttgtatcagatgtcctagacatgtaagtacgacatctt 10979411  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 56079870 - 56079820
Alignment:
Q  185 tttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatg 235  Q
    ||||||||||||| || |||||||||| ||||||||| |||||||||||||    
T  56079870 tttatattgtgttagctgcattttgttgaaacaagaagttctagcaagatg 56079820  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 13691274 - 13691369
Alignment:
Q  178 ttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||| |||| ||||| ||| |||| ||||||||||||||    
T  13691274 ttgggtttttatattgtgttggcttcattttgttaaaacaagaagttctaacaagatgttgtaccagatgtcctagtcatgaaagtacgacatctt 13691369  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 20187405 - 20187308
Alignment:
Q  175 ttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||||||||||||||||||| |||||| |||||||||| |  |||||||||| |||  ||||||||||||||||||||| | || ||||||||    
T  20187405 ttgttgggtttttatattgtgttggccgcattt-gttaaaacaaaatgttctagcaagttgtaagaccaaatgtcttagacatgttaatatgacatctt 20187308  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 21690833 - 21690909
Alignment:
Q  175 ttgttgggtttttatattgtg-ttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtctt 251  Q
    ||||| |||||||| |||||| ||||| ||||||||||||||||||  || ||||||||||||||||| | |||||||    
T  21690833 ttgttaggtttttacattgtgattggccgcattttgttaaaacaagtgtt-ctagcaagatgttggactagatgtctt 21690909  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 40584704 - 40584770
Alignment:
Q  202 gcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacat 270  Q
    ||||||| ||||||||| |  ||||||||||||||||||| | ||||||| |||||||| |||||||||    
T  40584704 gcatttttttaaaacaa-atgttctagcaagatgttggacaagatgtctt-gacatgtaggtacgacat 40584770  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 19583122 - 19583272
Alignment:
Q  184 ttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatcttttctcaaagt 283  Q
    ||||||||||||||| | ||||| ||||||||||| || |||||||||||||||||| || ||||| ||||||||||| ||||||||| | |  | | ||    
T  19583122 ttttatattgtgttgactgcattatgttaaaacaataaattctagcaagatgttggatcatatgtcctagacatgtaaatacgacatcatgt-accaggt 19583220  T
Q  284 gttatgatttgtttcgctttcttggaagatttggtttttacgttagatctct 335  Q
    |   |  ||||||||||||||||||||||||||  |||||||| ||||||||    
T  19583221 gaagtactttgtttcgctttcttggaagatttgacttttacgtgagatctct 19583272  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 3258970 - 3259051
Alignment:
Q  192 tgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||| |||| ||  ||| | |||||| ||||||||||||    
T  3258970 tgtgttggcttcattttgttaaaacaagaagttctagcaagatgttgtaccagattccttggccatgtatgtacgacatctt 3259051  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 3286459 - 3286536
Alignment:
Q  194 tgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||| |||| ||||| ||| |||||| ||||||||||    
T  3286459 tgttggcttcattttgttaaaacaagaagttctaacaagatgttgtaccatatgtcctagccatgtatgtacgacatc 3286536  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 931886 - 931972
Alignment:
Q  184 ttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||| ||||||||||| ||||||| | |||||||||  |||||||||||  |||||||| ||||| | ||||||| | |||||||||    
T  931886 ttttaaattgtgttggccgcattttctcaaaacaagatgttctagcaagaatttggaccagatgtcct-gacatgtgaatacgacatc 931972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 12391625 - 12391586
Alignment:
Q  181 ggtttttatattgtgttggcggcattttgttaaaacaaga 220  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  12391625 ggtttttatattgtgttggctacattttgttaaaacaaga 12391586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 35511044 - 35510971
Alignment:
Q  196 ttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||| ||||||||||||||||||  ||| |||||||||||||||| | ||||||| |||||||  ||||||||||    
T  35511044 ttggctgcattttgttaaaacaagtgttt-tagcaagatgttggacaagatgtctt-gacatgttggtacgacatc 35510971  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 54287848 - 54287820
Alignment:
Q  245 atgtcttagacatgtaagtacgacatctt 273  Q
    |||||||||||||||||||||||||||||    
T  54287848 atgtcttagacatgtaagtacgacatctt 54287820  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 12301224 - 12301319
Alignment:
Q  175 ttgttgggtttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    ||||| |||||||||| ||||||| | ||||||||||||||||| |  ||||||||||||||||||||| ||||||| ||||||| |||||||||||    
T  12301224 ttgttaggtttttataatgtgttgaccgcattttgttaaaacaatatgttctagcaagatgttggaccagatgtctt-gacatgtgagtacgacatc 12301319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 14911072 - 14911150
Alignment:
Q  191 ttgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacatgtaagtacgacatc 271  Q
    |||||||||| |||||||||||||||||| | |||||||||||||| ||| |||||||||| |||||||  ||||||||||    
T  14911072 ttgtgttggctgcattttgttaaaacaag-agttctagcaagatgtcggaacaaatgtctt-gacatgttggtacgacatc 14911150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 18541492 - 18541566
Alignment:
Q  183 tttttatattgtgttggcggcattttgttaaaacaagaatttctagcaagatgttggaccaaatgtcttagacat 257  Q
    ||||||||||||||||||  |||||||||||||||| || || || ||||||||||||||| || || |||||||    
T  18541492 tttttatattgtgttggctacattttgttaaaacaaaaagttataccaagatgttggaccagatttcctagacat 18541566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 2458 - 2418
Alignment:
Q  292 ttgtttcgctttcttggaagatttggtttttacgttagatc 332  Q
    ||||||| |||||||||||||||||||||| |||| |||||    
T  2458 ttgtttctctttcttggaagatttggttttcacgtgagatc 2418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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