View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_49 (Length: 369)
Name: NF18068_high_49
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 43362742 - 43362519
Alignment:
| Q |
19 |
ttacatgctgtatcataaatcaaaaagtggcaactgacttgtannnnnnnattcttctcctgatcccctatttggaatcaagattaagtttgataaatat |
118 |
Q |
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| T |
43362742 |
ttacatgctgtatcataaatcaaaaagtggcaactgacttctatttttttattcttctcctgatcccctatttgtaatcaagattaagtttgataaatat |
43362643 |
T |
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| Q |
119 |
aaaaggaatcaagactaag-aagttaaaaatggtatatctgaatacactttgctaaatgagatgttttataatatgcttttagaggaagttactaaaaga |
217 |
Q |
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| T |
43362642 |
aaaaggaatcaagactaaggaagttaaaaatggtatatctgaatacactttgctaaatgagatgttttataatatgcttttagaggaagttactaaaaga |
43362543 |
T |
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| Q |
218 |
attaacaatattttaatacagttg |
241 |
Q |
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| T |
43362542 |
attaacaatattttagtacagttg |
43362519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 43360460 - 43360409
Alignment:
| Q |
307 |
agagaaatgtgggtttgtttcacgagttgttgtcatcgactctatgtttcat |
358 |
Q |
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| T |
43360460 |
agagaaatgtgggtttgtttcacgagttgttgtcatcgactctatgtttcat |
43360409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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