View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_50 (Length: 367)
Name: NF18068_high_50
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 16330257 - 16329920
Alignment:
| Q |
4 |
aaattgattacgactaaattgatttcaactaaaagtgagttgaatgatacatgatttatgtttaggtacacttgagtaaaaataagttgaactacagatt |
103 |
Q |
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| T |
16330257 |
aaattgattccgtctaaattgatttcaactaaaattgagttgaacgttacatgatttatgttga--tacacttgagtaaaaataagttgaactacaaatt |
16330160 |
T |
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| Q |
104 |
taaggctaaaaaccttgtttggagataaaaactctaaatttcaacttcaagttaaacttcattctatgagacaaaagcaattctactcatagacacagaa |
203 |
Q |
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| T |
16330159 |
taaggctaaaaaccttgtttggaggcaaaaactctaaatttcaacttcaagttaaacttcattctatgagacaaaagcaactctactcataaacacagaa |
16330060 |
T |
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| Q |
204 |
acagtacaaaagtgtaattaaacatgaacgtaatctgatagattctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctacttgccag |
303 |
Q |
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|||| | ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
16330059 |
acagcaaaaaagtgtaattaaacatgaatgtaatctcatagattctttaccaatcgtgggatcagcaacaaagacaacagtactgtcatctacttgtcag |
16329960 |
T |
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| Q |
304 |
aaatctttgacagccaaacctgcataattatagtacatta |
343 |
Q |
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| T |
16329959 |
aaatctttgacagccaaacctgcataataatagtacatta |
16329920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43152376 - 43152420
Alignment:
| Q |
22 |
ttgatttcaactaaaagtgagttgaatgatacatgatttatgttt |
66 |
Q |
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| T |
43152376 |
ttgatttcaattaaaagtgagttgaatgaaaagtgatttatgttt |
43152420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 357
Target Start/End: Original strand, 27962042 - 27962402
Alignment:
| Q |
4 |
aaattgattacgactaaattgatttcaactaaaagtgagttgaatgatacatgatttatgtttaggtacacttgagtaaaaataagttgaactacagatt |
103 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||| | |||| | | ||||||| |||||||||| | ||| |
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| T |
27962042 |
aaattgattacgactaaattgatttcaaccaaaagtgagttaaatgttagatgatttatgtttggatacattcgtataaaaattagttgaactataaatt |
27962141 |
T |
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| Q |
104 |
taaggctaaaaaccttgtttggagataaaaactctaaatttcaacttcaagttaaacttcattctatgagacaaaagcaattctac-------tcataga |
196 |
Q |
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| T |
27962142 |
taaggctaagaaccacatttggaggtaaaaacaataaatttcaacttcaagttaaacttcattcta-gagacaaaaccaactttacaatttactcataaa |
27962240 |
T |
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| Q |
197 |
cacagaaacagtacaaaagtgtaattaaacatgaacgtaatctgatagattctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctac |
296 |
Q |
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| T |
27962241 |
cacaaaaacaacccaaaagtgtaatcgaacatgaacgtagtctcgtagattctttaccaaacgtgggatcagcaacaaagacaactgtactgtcatctac |
27962340 |
T |
|
| Q |
297 |
ttgccagaaatctttgacagccaaacctgcataattatagtaca-ttaatttcaagtttcat |
357 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
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|
| T |
27962341 |
ttgccagaaatctttgacagccaaacctgcataataataggacatttaatttcaagtttcat |
27962402 |
T |
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