View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_high_52 (Length: 358)
Name: NF18068_high_52
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_52 |
 | |
|
| [»] scaffold0147 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0147 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2368 - 2125
Alignment:
| Q |
1 |
acctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2368 |
acctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgct |
2269 |
T |
|
| Q |
101 |
cagcatgaggacatgaatcacggtagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgattctgatacatggttgttgttgatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2268 |
cagcatgaggacatgaatcacggtagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgattctgatacatggctgttgttgatggc |
2169 |
T |
|
| Q |
201 |
agataaagaaactgtgaaacttgaaaaagaatgtattggaacaa |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2168 |
agataaagaaactgggaaacttgaaaaagaatgtattggaacaa |
2125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 2062 - 2026
Alignment:
| Q |
307 |
aataaaagacataacacaagaatcagaagaattaatt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2062 |
aataaaagacataacacaagaatcagaagaattaatt |
2026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3451587 - 3451344
Alignment:
| Q |
1 |
acctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3451587 |
acctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcaggtgaagcgtagaacgaacaatgtgct |
3451488 |
T |
|
| Q |
101 |
cagcatgaggacatgaatcacggtagaaatcatattcaagaagagagttggaagaagaatcagaagaagatgattctgatacatggttgttgttgatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3451487 |
cagcatgaggacatgaatcacggtagaaatcatattcaagaagaaagttggaagaagaatcagaagaagatgattctgatacatggctgttgttgatggc |
3451388 |
T |
|
| Q |
201 |
agataaagaaactgtgaaacttgaaaaagaatgtattggaacaa |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3451387 |
agataaagaaactgggaaacttgaaaaagaatgtattggaacaa |
3451344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 3451281 - 3451245
Alignment:
| Q |
307 |
aataaaagacataacacaagaatcagaagaattaatt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3451281 |
aataaaagacataacacaagaatcagaagaattaatt |
3451245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University