View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_54 (Length: 349)
Name: NF18068_high_54
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 46885621 - 46885291
Alignment:
| Q |
1 |
aacaaatgcattacaaagtcatatgcttgcattagtggtcaaatagaaattggaatcaactgtgaaatttataatctgtttgactggtgatgtttttcta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46885621 |
aacaaatgcattacaaagtcatttgcttgcattagtggtcaaatagaaattgtaatcaactgtgaaatttataatctgtttgactggtgatgtttttcta |
46885522 |
T |
|
| Q |
101 |
ccataaaccaaatgcttgaaaagtatatctttgctaaagtcttgctagaatttatctaagtcaataaagtataaggtatgttgggtttataaagcatcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46885521 |
ccataaaccaaatgcttgaaaagtatatctttgctaaagtcttgctaaaatttatctaagtcaataaagtataaggtatgttgggtttataaagcatcct |
46885422 |
T |
|
| Q |
201 |
acacacataacaaaatctaaataagttttaagtatagaatattcactcatgagtatagcattataacatatataagagtcttaaacattcatttaatcat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46885421 |
acacacataacaaaatctaaataag-tttaagtatagaatattcactcatgagtatagcattataacatatataagagtcttaaacattcatttaatcat |
46885323 |
T |
|
| Q |
301 |
gttataatcaaccaaaaaataatacccatact |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
46885322 |
gttataatcaaccaaaaaataatacccatact |
46885291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 37684974 - 37685110
Alignment:
| Q |
133 |
gctaaagtcttgctagaatttatctaagtcaataaagtataaggtatgttgggtttataaagcatcctacacacataacaaaatctaaataagttttaag |
232 |
Q |
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|||||||||||||||| |||| | |||||||||||| ||||||| | |||| |||||||| |||| ||||||||| |||||||||||||| | || |
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| T |
37684974 |
gctaaagtcttgctagcttttaaccaagtcaataaagcataaggtctattggctttataaaacatctaacacacatagtaaaatctaaataagcctcaa- |
37685072 |
T |
|
| Q |
233 |
tatagaatattcactcatgagtatagcattataacata |
270 |
Q |
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||||||||||||| ||| |||| | |||||||||||| |
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| T |
37685073 |
tatagaatattcaaacataagtacaacattataacata |
37685110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 7498787 - 7498652
Alignment:
| Q |
133 |
gctaaagtcttgctagaatttatctaagtcaataaagtataaggtatgttgggtttataaagcatcctacacacataacaaaatctaaataagttttaag |
232 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||| ||||||| | |||| |||||||| ||||||||||||||| |||||||||||||| | || |
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| T |
7498787 |
gctaaagtcttgctagcttttaaccaagtcaataaagcataaggtctattggctttataaaacatcctacacacatagtaaaatctaaataagcctcaa- |
7498689 |
T |
|
| Q |
233 |
tatagaatattcactcatgagtatagcattataacat |
269 |
Q |
| |
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||||||||||||| ||| |||| | ||||||||||| |
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| T |
7498688 |
tatagaatattcaaacataagtacaacattataacat |
7498652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 21545883 - 21545968
Alignment:
| Q |
171 |
ataaggtatgttgggtttataaagcatcctacacacataacaaaatctaaataagttttaagtatagaatattcactcatgagtata |
257 |
Q |
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|
||||||| |||||| |||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||| |
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| T |
21545883 |
ataaggtttgttggctttataaaacatcctacacacatggcaaaatctaaataagccttaa-tatagaatattcaaacatgagtata |
21545968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 21546009 - 21546068
Alignment:
| Q |
272 |
ataagagtcttaaacattcatttaatcatgttataatcaaccaaaaaataatacccatac |
331 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
21546009 |
ataagagtctataatattcatttaatcatgttataatcaaccaaaaaatagtactcatac |
21546068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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