View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_high_71 (Length: 303)
Name: NF18068_high_71
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_71 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 42991503 - 42991666
Alignment:
| Q |
1 |
tctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42991503 |
tctcttccacttccttctctgattctgcattgcagagcaacgagcttgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatata |
42991602 |
T |
|
| Q |
101 |
taattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42991603 |
taattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 35018237 - 35018349
Alignment:
| Q |
42 |
gagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatataattactgcaacgatcttaagcgatttccacaaggtattc |
141 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || |||||||||||||| ||||||||| ||| |
|
|
| T |
35018237 |
gagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatcttaagcgattcccacaaggtgttc |
35018336 |
T |
|
| Q |
142 |
ctgctgagtgtag |
154 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
35018337 |
ctgttgagtgtag |
35018349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 42993585 - 42993646
Alignment:
| Q |
227 |
atttgtttgccgttgttttaatttattattatgattctttgatttactatcttcctctgtatttt |
291 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42993585 |
atttgtttgttgttgttttaatttat---tatgattctttgatttactatcttcctctgtatttt |
42993646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38214000 - 38213792
Alignment:
| Q |
1 |
tctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
38214000 |
tctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatcta |
38213901 |
T |
|
| Q |
101 |
taattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtataata |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
38213900 |
taattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataata |
38213801 |
T |
|
| Q |
194 |
gccatctta |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
38213800 |
gccatctta |
38213792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38218219 - 38218011
Alignment:
| Q |
1 |
tctcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
38218219 |
tctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatcta |
38218120 |
T |
|
| Q |
101 |
taattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtataata |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
38218119 |
taattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataata |
38218020 |
T |
|
| Q |
194 |
gccatctta |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
38218019 |
gccatctta |
38218011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University