View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_73 (Length: 303)
Name: NF18068_high_73
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_73 |
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| [»] scaffold0147 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 2545 - 2352
Alignment:
| Q |
110 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
209 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2545 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
2446 |
T |
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| Q |
210 |
ctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatc |
303 |
Q |
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| T |
2445 |
ctatttttttcttcattgttatgaaataataatacacaagaaaatgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatc |
2352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2654 - 2625
Alignment:
| Q |
1 |
aacaacatgacttcagtcaaactgagatat |
30 |
Q |
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| T |
2654 |
aacaacatgacttcagtcaaactgagatat |
2625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 3451764 - 3451571
Alignment:
| Q |
110 |
attgaataaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
209 |
Q |
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| T |
3451764 |
attgattaaagataagaacaaaaacctggaataagataatagacccagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaacc |
3451665 |
T |
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| Q |
210 |
ctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatc |
303 |
Q |
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| T |
3451664 |
ctatttttttcttcattgttatgaaataataatacacaagaaaatgcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatc |
3451571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3451873 - 3451844
Alignment:
| Q |
1 |
aacaacatgacttcagtcaaactgagatat |
30 |
Q |
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| T |
3451873 |
aacaacatgacttcagtcaaactgagatat |
3451844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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