View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18068_high_78 (Length: 286)
Name: NF18068_high_78
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_78 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 30173965 - 30173713
Alignment:
| Q |
19 |
atatcatatattagatgtaagagttaattatacaagtacaattaacttttatatccaataatatcttgtaaaagaacaagtgaatcatgtaaatatttat |
118 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30173965 |
atatcatagattagatgtaagagt--attatacaagtacagttaacttttatatccaataatatcttgtaaaagaacaagtgaatcatgtaaatatgtat |
30173868 |
T |
|
| Q |
119 |
atacctgatggaatctcggatgaacttttccatttagatttgcaaattgcggaattgaagccaagattcactaatcgatcgcatatttctgtaagcaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30173867 |
atacctgatggaatctcggatgaactcttccatttagatttgcaaattgcggaattgaagccaagattcactaatcgatcgcatatttctgtaagcaaac |
30173768 |
T |
|
| Q |
219 |
atttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatgtt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30173767 |
atttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatgtt |
30173713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 12360133 - 12359999
Alignment:
| Q |
85 |
tgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttc-catttagatttgcaaattgcggaattgaagccaag |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| | |
|
|
| T |
12360133 |
tgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactaccctaatttagatttgcaaattccggaaatgaagcc-ac |
12360035 |
T |
|
| Q |
184 |
attcactaatcgatcgcatatttctgtaagcaaaca |
219 |
Q |
| |
|
||||| ||| |||| ||||||||| | |||||||| |
|
|
| T |
12360034 |
attcaacaattgatcacatatttctctgagcaaaca |
12359999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University