View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_8 (Length: 636)
Name: NF18068_high_8
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 39917257 - 39917423
Alignment:
| Q |
139 |
gtattagaggaaatactttagaagcggtagtgagagaaagcataaaagtgaaaccatataaaggaaaggagaacagataaagacatattctaaattaaaa |
238 |
Q |
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| T |
39917257 |
gtattagaggaaatactttagaagcggtagtgagagaaagcataaaagtgaaaccatataaaggaaaggagaacagataaagacatattctaaattaaaa |
39917356 |
T |
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| Q |
239 |
atactggaattaaatacaggaagtggtatggattctgtatatat--agagagagaaagatatagaga |
303 |
Q |
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| T |
39917357 |
atactggaattaaatacaggaagtggtatggattctgtatatatagagagagagaaagatatagaga |
39917423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 504 - 621
Target Start/End: Original strand, 39917635 - 39917752
Alignment:
| Q |
504 |
ctctaaaattggctttgagacagtgatcacattcaaaactctccttttagttgaagaagcctctttctcttttcaatattttttctactgataaataaat |
603 |
Q |
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| T |
39917635 |
ctctaaaattggctttgagacagtgatcacattcaaaactctccttttagttgaagaagcctctttctcttttcaatattttttctacttataaataaat |
39917734 |
T |
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| Q |
604 |
ctaggttactttctcaat |
621 |
Q |
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| T |
39917735 |
ctaggttactttctcaat |
39917752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 344 - 458
Target Start/End: Original strand, 39917467 - 39917581
Alignment:
| Q |
344 |
gatcaggtatttaaagcttcttctcaaaagaggattttgatgtatacttcacacaagctctataagattatgaactcacactcaacttatagcttctaat |
443 |
Q |
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| T |
39917467 |
gatcaggtatttaaagcttcttctcacaagaggattttgatgtatacttcacacaagctctataagattatgaactcacactcaacttatagcctctaat |
39917566 |
T |
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| Q |
444 |
aaacttttcaatata |
458 |
Q |
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| T |
39917567 |
aaacttttcaatata |
39917581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 39917128 - 39917191
Alignment:
| Q |
11 |
cacaggactgcgcagccatagagccgccattttctctttcctttacttactttatgtttttctg |
74 |
Q |
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| T |
39917128 |
cacagaaccgcgcagccatagagccgccattttctctttcctttacttactttatgtttttctg |
39917191 |
T |
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