View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_81 (Length: 278)
Name: NF18068_high_81
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_81 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 1696379 - 1696127
Alignment:
| Q |
1 |
atcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgcacgcatgcataaagtataattttaac-ttt |
99 |
Q |
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| T |
1696379 |
atcacttcttcttctcttttcagtatcatttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttt |
1696280 |
T |
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| Q |
100 |
tctgataattgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgannnnnnnnnc |
199 |
Q |
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| T |
1696279 |
tctgataatcgattttggaagtttttagttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttg---- |
1696184 |
T |
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| Q |
200 |
tgaaatttgaatgcagggaatgttatctcgtttggactgttcttcgcaccagggtaa |
256 |
Q |
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| T |
1696183 |
tgaaatttgaatgcagggaatgttatctcgtttggactgttcttctcaccagcgtaa |
1696127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 1685805 - 1685576
Alignment:
| Q |
29 |
tttcagtttattttaactttttctcataatcgattatcatgcacgcatgcataaagtataattttaactttt-ctgataattgattttagaagtctttag |
127 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||| |
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| T |
1685805 |
tttcagtttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttag |
1685706 |
T |
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| Q |
128 |
ttcagttacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgannnnnnnnnctgaaa-tttgaatgcagggaatgttatc |
226 |
Q |
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| T |
1685705 |
ttcagttacgattgattttagctttttgtgttaatcgattaatcatacatgtttctgattga--tttttttctgaaattttgaatgaagggaatgttatc |
1685608 |
T |
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| Q |
227 |
tcgtttggactgttcttcgcaccagggtaact |
258 |
Q |
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| T |
1685607 |
tcgtttggactgttcttcgcaccagggtaact |
1685576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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