View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18068_high_83 (Length: 276)

Name: NF18068_high_83
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18068_high_83
NF18068_high_83
[»] scaffold0027 (2 HSPs)
scaffold0027 (138-239)||(118471-118572)
scaffold0027 (25-75)||(118635-118685)
[»] chr5 (1 HSPs)
chr5 (171-238)||(3427156-3427223)
[»] chr2 (1 HSPs)
chr2 (173-230)||(17240447-17240504)
[»] chr8 (2 HSPs)
chr8 (173-229)||(5898872-5898928)
chr8 (171-238)||(26064972-26065039)
[»] chr7 (2 HSPs)
chr7 (171-239)||(6842177-6842246)
chr7 (173-230)||(8802875-8802932)


Alignment Details
Target: scaffold0027 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 118572 - 118471
Alignment:
Q  138 aatagagagttataaaagcagttcaaatacagcgtttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaattggttac 237  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  118572 aatagggagttataaaagcagttcaaatacagcgtttaagtttggttaactgaacttttttaaatatgtggttcagtttatgaaccatttaattggttac 118473  T
Q  238 ag 239  Q
    ||    
T  118472 ag 118471  T

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Target: scaffold0027; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 118685 - 118635
Alignment:
Q  25 ggcgaaacgaaagatgtcgatgaaaactctggggagaagtaaccatgcgag 75  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  118685 ggcgaaacgaaagatgttgatgaaaactctggagagaagtaaccatacgag 118635  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 3427223 - 3427156
Alignment:
Q  171 gtttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaattggttaca 238  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  3427223 gtttaagtttggttaattgaacttttttaaatatgtggttcagttcatgaaccatttaattgattaca 3427156  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 17240504 - 17240447
Alignment:
Q  173 ttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaat 230  Q
    ||||||||||||||||||| || ||||||| | ||||| |||||| ||||||||||||    
T  17240504 ttaagtttggttaactgaatttgtttaaatttatggttcagtttacgaaccatttaat 17240447  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 5898928 - 5898872
Alignment:
Q  173 ttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaa 229  Q
    ||||||||||||||||||| |  ||||||| ||||||| | ||||||||||||||||    
T  5898928 ttaagtttggttaactgaattgatttaaatttgtggttcaatttatgaaccatttaa 5898872  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 26064972 - 26065039
Alignment:
Q  171 gtttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaattggttaca 238  Q
    |||| |||| ||||||||||  |||||| ||||||||||| |||| ||||||||| ||| ||||||||    
T  26064972 gtttcagttcggttaactgattttttttgaatatgtggttcagttcatgaaccatataagtggttaca 26065039  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 6842177 - 6842246
Alignment:
Q  171 gtttaagtttggttaactga-acttttttaaatatgtggtttagtttatgaaccatttaattggttacag 239  Q
    |||||||||||||||||||| | |||||||||||||||||| | || || |||||| |||  ||||||||    
T  6842177 gtttaagtttggttaactgatatttttttaaatatgtggttcaattcataaaccatataaaaggttacag 6842246  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 8802932 - 8802875
Alignment:
Q  173 ttaagtttggttaactgaacttttttaaatatgtggtttagtttatgaaccatttaat 230  Q
    |||||||||||||||| || |  ||||||  ||||||||||||||||||||| |||||    
T  8802932 ttaagtttggttaacttaattgatttaaaattgtggtttagtttatgaaccaattaat 8802875  T

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