View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_90 (Length: 253)
Name: NF18068_high_90
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 33132697 - 33132903
Alignment:
| Q |
1 |
aaaatattaaattcaacatgcagaaaaaatattcaaactatatgtgattcnnnnnnnagtagaaaacggtggaaacattatatcaaactatatctaatat |
100 |
Q |
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| T |
33132697 |
aaaatattaaattcaacatacacaaaaaatattcaaactatatgtgattctttttt-agtagaaaacggtggaaacattatatcaaactatatctaatat |
33132795 |
T |
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| Q |
101 |
ttgtcttatttaagattgttgcttgataaatataagnnnnnnnnatatcatgatattggtaggaagtttccaccaccacttaacaatgactaatttatgt |
200 |
Q |
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| T |
33132796 |
ttttcctatttaagattgttgcttgacaaatataagt--------tttttttatatcggtaggaagtttccacaaccgcttaacaatgactaatttctgt |
33132887 |
T |
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| Q |
201 |
cgaaaaatcaatgggg |
216 |
Q |
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||| |||||||||||| |
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| T |
33132888 |
cgagaaatcaatgggg |
33132903 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 32729309 - 32729354
Alignment:
| Q |
149 |
catgatattggtaggaagtttccaccaccacttaacaatgactaat |
194 |
Q |
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| T |
32729309 |
catgatattggtatgaagtttccacaaccgcttaacaatgactaat |
32729354 |
T |
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