View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18068_high_99 (Length: 238)
Name: NF18068_high_99
Description: NF18068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18068_high_99 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 6200848 - 6201067
Alignment:
| Q |
19 |
ttaggttgttttgtgtaactgtgagagtgtccttgtttacttgttggaggtagaaaacaaggaagggaagaaaaagacctaataaaaatactacattaat |
118 |
Q |
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| T |
6200848 |
ttaggttgttttgtgtaactgtgacagtgtccttgtttacttgttggaggtagaaaacaaggaagggaagaaaaagacctaataaaaatactacattaat |
6200947 |
T |
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| Q |
119 |
tgaacactatagattatggtacgagactatgataaatcttacttgatcatagtttcaaataaaatttatgagtgtacactcttaaataaaaataattaaa |
218 |
Q |
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| T |
6200948 |
tgaacactatagattatggtacgagactatgataaatcttacttgatcatagtttcaaataaaatttatgagtgtacactcttaaataaaaataattaaa |
6201047 |
T |
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| Q |
219 |
agagaaaatgattacttgat |
238 |
Q |
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| T |
6201048 |
agagaaaatgattacttgat |
6201067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 6194546 - 6194578
Alignment:
| Q |
46 |
tgtccttgtttacttgttggaggtagaaaacaa |
78 |
Q |
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| T |
6194546 |
tgtccttgtttgcttgttggaggtagaaaacaa |
6194578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 7481052 - 7481022
Alignment:
| Q |
202 |
aaataaaaataattaaaagagaaaatgatta |
232 |
Q |
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| T |
7481052 |
aaataaaaataattaaaagagaaaatgatta |
7481022 |
T |
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